Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0815
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    47   2e-06
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    29   0.52 
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    29   0.69 
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    29   0.69 
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    28   0.91 
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    26   3.7  

>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +1

Query: 412 FVLVGAPGDYVFGGEGLDAVVTQLLGQLE-NSGPPPLPRDQLAALPQEILTEDHAAKGTA 588
           F L G PGDY +G  GLD +++QL+ Q + ++ P P P D +A +  +   ++   +   
Sbjct: 336 FNLSGNPGDYAWGARGLDDIISQLMEQAQGHNAPAPAPEDVIAKMKVQKPPKELIDEEGE 395

Query: 589 CSVC 600
           C++C
Sbjct: 396 CTIC 399



 Score = 32.3 bits (70), Expect = 0.056
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 85  VERRPTLRFFCHRCDIEFEDVLQDYTCPYCASGFIEQLESEADGDFDDADMSN 243
           +E +P + ++CH C  EF+   +   CP C S F+E +E     + DD   +N
Sbjct: 1   MESQPVI-WYCHSCSNEFQ---RPGNCPRCNSDFVEMVEPNTAPE-DDPRAAN 48


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -3

Query: 471 YCV*AFSSKNIVSRCSDKYKWCTSSCSTSARPPGSHH 361
           YC+ A SS+ +V    ++    + + +++ARPP SHH
Sbjct: 192 YCIFADSSEKMVVSSEEQIICISLNPNSAARPPFSHH 228


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 20/47 (42%), Positives = 23/47 (48%)
 Frame = +1

Query: 442 VFGGEGLDAVVTQLLGQLENSGPPPLPRDQLAALPQEILTEDHAAKG 582
           VF GE        LLG+ E SG PP PR     +PQ  +T D  A G
Sbjct: 440 VFEGERARTKDCNLLGKFELSGIPPAPR----GVPQIEVTFDVDANG 482


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 20/47 (42%), Positives = 23/47 (48%)
 Frame = +1

Query: 442 VFGGEGLDAVVTQLLGQLENSGPPPLPRDQLAALPQEILTEDHAAKG 582
           VF GE        LLG+ E SG PP PR     +PQ  +T D  A G
Sbjct: 440 VFEGERARTKDCNLLGKFELSGIPPAPR----GVPQIEVTFDVDANG 482


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 442 VFGGEGLDAVVTQLLGQLENSGPPPLPRDQ 531
           V+ GE ++    + LG+ + +G PP+PR Q
Sbjct: 445 VYQGERVNCAENEPLGEFQLTGIPPMPRGQ 474


>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/53 (22%), Positives = 24/53 (45%)
 Frame = -3

Query: 282 VKHWWWCLAIIVQVAHICIVKITIRFTLQLLYKTTSTIWACIILQNIFKFYIT 124
           + +WW C   ++Q   + +  + I F L+  +      W  II    ++ Y+T
Sbjct: 36  ISYWWLCSIALIQTWWVLLGLLPIFFALE--HYEVPYKWIFIIEMLYYELYLT 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,776
Number of Sequences: 5004
Number of extensions: 44069
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)