SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0815
         (602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56580.2 68416.m06292 zinc finger (C3HC4-type RING finger) fa...    47   1e-05
At3g56580.1 68416.m06291 zinc finger (C3HC4-type RING finger) fa...    47   1e-05
At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger) fa...    46   1e-05
At2g40830.3 68415.m05041 zinc finger (C3HC4-type RING finger) fa...    43   2e-04
At2g40830.2 68415.m05040 zinc finger (C3HC4-type RING finger) fa...    43   2e-04
At2g40830.1 68415.m05039 zinc finger (C3HC4-type RING finger) fa...    43   2e-04
At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger) fa...    39   0.002
At5g01980.1 68418.m00117 zinc finger (C3HC4-type RING finger) fa...    39   0.003
At4g26400.2 68417.m03800 zinc finger (C3HC4-type RING finger) fa...    39   0.003
At4g26400.1 68417.m03799 zinc finger (C3HC4-type RING finger) fa...    39   0.003
At1g60360.1 68414.m06796 zinc finger (C3HC4-type RING finger) fa...    35   0.036
At3g13430.1 68416.m01688 zinc finger (C3HC4-type RING finger) fa...    34   0.083
At2g25380.1 68415.m03039 zinc finger protein-related very low si...    34   0.083
At3g46620.1 68416.m05061 zinc finger (C3HC4-type RING finger) fa...    31   0.44 
At4g03820.2 68417.m00529 expressed protein                             31   0.59 
At4g03820.1 68417.m00528 expressed protein                             31   0.59 
At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger) fa...    29   1.8  
At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica...    29   1.8  
At2g29910.2 68415.m03633 F-box family protein contains F-box dom...    29   2.4  
At2g29910.1 68415.m03632 F-box family protein contains F-box dom...    29   2.4  
At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger) fa...    29   3.1  
At1g55380.1 68414.m06334 DC1 domain-containing protein contains ...    28   4.1  
At5g59550.1 68418.m07462 zinc finger (C3HC4-type RING finger) fa...    28   5.5  
At5g49230.1 68418.m06094 drought-responsive family protein simil...    27   7.2  
At5g19090.2 68418.m02270 heavy-metal-associated domain-containin...    27   7.2  
At5g19090.1 68418.m02269 heavy-metal-associated domain-containin...    27   7.2  
At5g02490.1 68418.m00182 heat shock cognate 70 kDa protein 2 (HS...    27   7.2  
At3g19950.1 68416.m02525 zinc finger (C3HC4-type RING finger) fa...    27   7.2  
At1g79190.1 68414.m09233 expressed protein                             27   7.2  
At5g61080.1 68418.m07664 expressed protein predicted proteins, A...    27   9.6  
At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger) fa...    27   9.6  
At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger) fa...    27   9.6  

>At3g56580.2 68416.m06292 zinc finger (C3HC4-type RING finger)
           family protein contains INTERPRO domain, IPR001841, RING
           finger
          Length = 320

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 19/182 (10%)
 Frame = +1

Query: 112 FCHRCDIEFEDVLQDYTCPYCASGFIEQLE---SEADGDFD-DADMSNLDDDRQAPPPML 279
           +CHRC        +D  C YC  GF+E+++   S A  D + D     ++         L
Sbjct: 9   WCHRCQRAVWLRARDAVCSYCGGGFVEEIDIGPSRAHRDVERDPTFDLMEAFSAFMRSRL 68

Query: 280 NDLAF-LMTGGRYRNTGRRD-TILEQLLWM--MXXXXXXXXXXXXXXXFVLVGAPG---- 435
            + ++     GR  + G    + L  LL                    FV   APG    
Sbjct: 69  AERSYDREISGRLGSAGSESFSNLAPLLIFGGQAPFRLAGGDNSSVEAFVNGAAPGIGIA 128

Query: 436 ------DYVFGGEGLDAVVTQLLGQLENSGPPPLPRDQLAALPQEILTEDH-AAKGTACS 594
                 DY F G GL+ ++ QL     + GPPP P+  + ALP   +T+ H  +  + C 
Sbjct: 129 RGTNAGDYFF-GPGLEELIEQLSSGTHHRGPPPAPKSSIDALPTIKITQKHLKSSDSHCP 187

Query: 595 VC 600
           VC
Sbjct: 188 VC 189


>At3g56580.1 68416.m06291 zinc finger (C3HC4-type RING finger)
           family protein contains INTERPRO domain, IPR001841, RING
           finger
          Length = 320

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 48/182 (26%), Positives = 72/182 (39%), Gaps = 19/182 (10%)
 Frame = +1

Query: 112 FCHRCDIEFEDVLQDYTCPYCASGFIEQLE---SEADGDFD-DADMSNLDDDRQAPPPML 279
           +CHRC        +D  C YC  GF+E+++   S A  D + D     ++         L
Sbjct: 9   WCHRCQRAVWLRARDAVCSYCGGGFVEEIDIGPSRAHRDVERDPTFDLMEAFSAFMRSRL 68

Query: 280 NDLAF-LMTGGRYRNTGRRD-TILEQLLWM--MXXXXXXXXXXXXXXXFVLVGAPG---- 435
            + ++     GR  + G    + L  LL                    FV   APG    
Sbjct: 69  AERSYDREISGRLGSAGSESFSNLAPLLIFGGQAPFRLAGGDNSSVEAFVNGAAPGIGIA 128

Query: 436 ------DYVFGGEGLDAVVTQLLGQLENSGPPPLPRDQLAALPQEILTEDH-AAKGTACS 594
                 DY F G GL+ ++ QL     + GPPP P+  + ALP   +T+ H  +  + C 
Sbjct: 129 RGTNAGDYFF-GPGLEELIEQLSSGTHHRGPPPAPKSSIDALPTIKITQKHLKSSDSHCP 187

Query: 595 VC 600
           VC
Sbjct: 188 VC 189


>At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 351

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = +1

Query: 85  VERRPTLRFFCHRCDIEFEDVLQ-DYTCPYCASGFIEQLESEADGDFDDADMSNLDDDRQ 261
           +E     R++CH C      V++ +  CP+C SGF+E++E   D D D +D +++  +  
Sbjct: 1   MEEAVVTRYWCHMCSQTVNPVMEAEIKCPFCQSGFVEEMED--DDDHDSSDPADVRANNS 58

Query: 262 APPPMLNDL 288
              P+L +L
Sbjct: 59  LWAPILMEL 67


>At2g40830.3 68415.m05041 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 328

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 424 GAPGDYVFGGEGLDAVVTQLLGQLENSGPPPLPRDQLAALPQEILTEDH-AAKGTACSVC 600
           G  GDY FG  GL+ +  QL       GPPP PR  + ALP   + + H  +  + C VC
Sbjct: 135 GNTGDYFFG-PGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKIAQRHLRSSDSNCPVC 193



 Score = 34.3 bits (75), Expect = 0.063
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 112 FCHRCDIEFEDVLQDYTCPYCASGFIEQLESEADGDFD 225
           +CHRC        Q+  C YC  GF+E+L+      FD
Sbjct: 9   WCHRCQRAVRLHGQEPVCFYCGGGFVEELDMAQASPFD 46


>At2g40830.2 68415.m05040 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 328

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 424 GAPGDYVFGGEGLDAVVTQLLGQLENSGPPPLPRDQLAALPQEILTEDH-AAKGTACSVC 600
           G  GDY FG  GL+ +  QL       GPPP PR  + ALP   + + H  +  + C VC
Sbjct: 135 GNTGDYFFG-PGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKIAQRHLRSSDSNCPVC 193



 Score = 34.3 bits (75), Expect = 0.063
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 112 FCHRCDIEFEDVLQDYTCPYCASGFIEQLESEADGDFD 225
           +CHRC        Q+  C YC  GF+E+L+      FD
Sbjct: 9   WCHRCQRAVRLHGQEPVCFYCGGGFVEELDMAQASPFD 46


>At2g40830.1 68415.m05039 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 328

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 424 GAPGDYVFGGEGLDAVVTQLLGQLENSGPPPLPRDQLAALPQEILTEDH-AAKGTACSVC 600
           G  GDY FG  GL+ +  QL       GPPP PR  + ALP   + + H  +  + C VC
Sbjct: 135 GNTGDYFFG-PGLEELFEQLSAGTTRRGPPPAPRSAIDALPTIKIAQRHLRSSDSNCPVC 193



 Score = 34.3 bits (75), Expect = 0.063
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 112 FCHRCDIEFEDVLQDYTCPYCASGFIEQLESEADGDFD 225
           +CHRC        Q+  C YC  GF+E+L+      FD
Sbjct: 9   WCHRCQRAVRLHGQEPVCFYCGGGFVEELDMAQASPFD 46


>At5g56340.1 68418.m07032 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 396

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 85  VERRPTLRFFCHRCDIEFEDVLQ-DYTCPYCASGFIEQLESEADG 216
           +E     R++CH C      V++ +  CP+C SGFIE++     G
Sbjct: 1   MEETMAARYWCHMCSQMVNPVMESEIKCPFCQSGFIEEMSGNGGG 45


>At5g01980.1 68418.m00117 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 493

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +1

Query: 433 GDYVFGGEGLDAVVTQLLGQLENS--GPPPLPRDQLAALPQEILTEDHAAKGTACSVC 600
           GDY+    G D ++ QL  + +NS  G PP     +  LP+ I+ E+H  KG  C++C
Sbjct: 298 GDYL-DERGFDELLEQL-AESDNSRRGAPPASVSCVRNLPRVIIAEEHVMKGLVCAIC 353


>At4g26400.2 68417.m03800 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 356

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 106 RFFCHRCDIEFEDVL-QDYTCPYCASGFIEQLESEADG 216
           R++CH C      V+  +  CP+C SGF+E++  E +G
Sbjct: 4   RYWCHMCSQMVNPVIGAEIKCPFCQSGFVEEMSREING 41


>At4g26400.1 68417.m03799 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 356

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 106 RFFCHRCDIEFEDVL-QDYTCPYCASGFIEQLESEADG 216
           R++CH C      V+  +  CP+C SGF+E++  E +G
Sbjct: 4   RYWCHMCSQMVNPVIGAEIKCPFCQSGFVEEMSREING 41


>At1g60360.1 68414.m06796 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 327

 Score = 35.1 bits (77), Expect = 0.036
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 436 DYVFGGEGLDAVVTQLLGQLENSGPPPLPRDQLAALPQEILTEDHAAKG-TACSVC 600
           DY  G   L+ ++ QL  Q +  GPPP     + +LP   +T  H     + C+VC
Sbjct: 173 DYFTGASSLEQLIEQLT-QDDRPGPPPASEPTINSLPSVKITPQHLTNDMSQCTVC 227


>At3g13430.1 68416.m01688 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 315

 Score = 33.9 bits (74), Expect = 0.083
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 109 FFCHRCDIEFEDVLQD--YTCPYCASGFIEQLESEADGDFDDA 231
           ++CH C      ++QD    C +C SGF+E++++  D    D+
Sbjct: 9   YWCHMCSRSVIPLIQDEIIKCNFCQSGFVEEMDNNDDHQAADS 51


>At2g25380.1 68415.m03039 zinc finger protein-related very low
           similarity to SP|O95376 Ariadne-2 protein homolog
           (ARI-2) (Triad1 protein) {Homo sapiens}; contains Pfam
           profile PF01485: IBR (In Between Ring fingers) domain
          Length = 350

 Score = 33.9 bits (74), Expect = 0.083
 Identities = 21/48 (43%), Positives = 28/48 (58%)
 Frame = +1

Query: 112 FCHRCDIEFEDVLQDYTCPYCASGFIEQLESEADGDFDDADMSNLDDD 255
           FC+ C IE++   QD TCP   SG  E    +AD D DD D+ + +DD
Sbjct: 305 FCYGCGIEWKKN-QD-TCP---SGCREMGHGDADSDDDDDDVDDDEDD 347


>At3g46620.1 68416.m05061 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 395

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +1

Query: 100 TLRFFCHRCDI-----EFEDVLQDYTCPYCASGFIEQLESEAD 213
           T  ++C+ C       E +D      CPYC  GFIE++E  ++
Sbjct: 28  TTSYWCYSCTRFISVWEDQDANAGVLCPYCNGGFIEEIEDSSN 70



 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
 Frame = +1

Query: 451 GEGLDAVVTQLLGQLE-------NSGPPPLPRDQLAALPQEILTEDHAAKGTACSVC 600
           G G + ++ QL  Q+E        SG PP  +  + +LP+  +++ H      C+VC
Sbjct: 163 GSGFERLLEQL-SQIEASGNGIGRSGNPPASKSAIESLPRVEISDCHTKAEANCAVC 218


>At4g03820.2 68417.m00529 expressed protein 
          Length = 453

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = -3

Query: 270 WWCLAIIVQVAHICIVKIT--IRFTLQL---LYKTTSTIWACIILQNIFKFYITPVAEKP 106
           WW  +   Q+ +I    ++  +  TLQL   LY+T+  I ACI+ QNI    +  + E  
Sbjct: 158 WWYASGFNQIPYIINPTLSHVLACTLQLSSWLYRTSLFIIACILYQNICHLQVLRLDEFA 217

Query: 105 *CWSS 91
            C++S
Sbjct: 218 RCFAS 222


>At4g03820.1 68417.m00528 expressed protein 
          Length = 437

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
 Frame = -3

Query: 270 WWCLAIIVQVAHICIVKIT--IRFTLQL---LYKTTSTIWACIILQNIFKFYITPVAEKP 106
           WW  +   Q+ +I    ++  +  TLQL   LY+T+  I ACI+ QNI    +  + E  
Sbjct: 158 WWYASGFNQIPYIINPTLSHVLACTLQLSSWLYRTSLFIIACILYQNICHLQVLRLDEFA 217

Query: 105 *CWSS 91
            C++S
Sbjct: 218 RCFAS 222


>At1g68180.1 68414.m07788 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 248

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 505 GPPPLPRDQLAALPQEILTEDHAAKGTACSVC 600
           GPPP  +  + A+   I+T++   K   C++C
Sbjct: 110 GPPPASQSAIEAVRTVIITDEDLVKEKVCAIC 141


>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to SP|P79051 DNA
           repair protein rhp16 (RAD16 homolog)
           {Schizosaccharomyces pombe}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain, PF00097: Zinc finger,
           C3HC4 type (RING finger)
          Length = 833

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 94  RPTLRFFCHRCDIEFEDVLQDYTCPYC 174
           RP   +FC  CD    D +   +CP+C
Sbjct: 409 RPYSYYFCKDCDCRILDYVAHQSCPHC 435


>At2g29910.2 68415.m03633 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 335

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 190 EQLESEADGDFDDADMSNLDDDRQAPPPMLNDLAFLMTG 306
           E+L  E  G + D D S  DD+     P+L D+  L+TG
Sbjct: 260 ERLRDEKAGGYGDCD-SVYDDEEYPDDPILGDVTNLVTG 297


>At2g29910.1 68415.m03632 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 352

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 190 EQLESEADGDFDDADMSNLDDDRQAPPPMLNDLAFLMTG 306
           E+L  E  G + D D S  DD+     P+L D+  L+TG
Sbjct: 260 ERLRDEKAGGYGDCD-SVYDDEEYPDDPILGDVTNLVTG 297


>At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 401

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +1

Query: 109 FFCHRCDIEFEDVLQDYTCPYCASGFIEQLESEADGDFDDADMSNLDDDRQAP 267
           ++C+ C   F  V    +CP C  GF+E ++   D    D+  +      ++P
Sbjct: 6   YWCYSCS-RFVWVSDSISCPDCDGGFLELIQEPLDFTPSDSFTTTTTTQHRSP 57


>At1g55380.1 68414.m06334 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 661

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 199 ESEADGDFDDADMSNLDDD 255
           E E DGD DD D S+ DDD
Sbjct: 127 ECEDDGDDDDGDSSDSDDD 145


>At5g59550.1 68418.m07462 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 407

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
 Frame = +1

Query: 451 GEGLDAVVTQLLGQLE-------NSGPPPLPRDQLAALPQEILTEDHAAKGTACSVC 600
           G G + ++ QL  Q+E        SG PP  +  + +LP+  +++ H      C+VC
Sbjct: 147 GSGFERLLEQL-SQIEASATGIGRSGNPPASKSAIESLPRVEISDCHIGSEANCAVC 202


>At5g49230.1 68418.m06094 drought-responsive family protein similar
           to drought-induced mRNA, Di19 [Arabidopsis thaliana]
           gi|469110|emb|CAA55321
          Length = 211

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 43  WCSCIN*FNMADAMVERRPTLRFFCHRCDIEFEDVLQ-DYTCPYCASGF 186
           W +C   F+ + +   RR   R   +  D+E ED L+ ++ CP+CA  F
Sbjct: 6   WINCPPVFSSSPS--SRRYQSRSDLYLGDVEGEDDLKAEFMCPFCADEF 52


>At5g19090.2 68418.m02270 heavy-metal-associated domain-containing
           protein contains Pfam heavy-metal-associated domain
           PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
           isoform contains a non-consensus TG-acceptor splice site
           at intron 3
          Length = 465

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 184 FIEQLESEADGDFDDADMSNLDDDRQAPPPMLNDLAFLMTGG 309
           F ++ + E D D D+ D    DD+    PP  N +  +M GG
Sbjct: 223 FSDEFDDEFDEDDDEFDDDLEDDEFDDHPPPPNKMKPMMGGG 264


>At5g19090.1 68418.m02269 heavy-metal-associated domain-containing
           protein contains Pfam heavy-metal-associated domain
           PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
           isoform contains a non-consensus TG-acceptor splice site
           at intron 3
          Length = 587

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 184 FIEQLESEADGDFDDADMSNLDDDRQAPPPMLNDLAFLMTGG 309
           F ++ + E D D D+ D    DD+    PP  N +  +M GG
Sbjct: 223 FSDEFDDEFDEDDDEFDDDLEDDEFDDHPPPPNKMKPMMGGG 264


>At5g02490.1 68418.m00182 heat shock cognate 70 kDa protein 2
           (HSC70-2) (HSP70-2) identical to SP|P22954 Heat shock
           cognate 70 kDa protein 2 (Hsc70.2) {Arabidopsis
           thaliana}
          Length = 653

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +1

Query: 442 VFGGEGLDAVVTQLLGQLENSGPPPLPR 525
           VF GE        LLG+ E SG PP PR
Sbjct: 448 VFEGERARTKDNNLLGKFELSGIPPAPR 475


>At3g19950.1 68416.m02525 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 328

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +1

Query: 109 FFCHRCDIEFEDVLQ---DYTCPYCASGFIEQLE 201
           FFC++C+      +    D  CP C  GF+E+ E
Sbjct: 21  FFCYQCNQTVTISISSSADPFCPICNQGFLEEYE 54


>At1g79190.1 68414.m09233 expressed protein
          Length = 1274

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 358 RVTVRGLYLFYLCFGTDLPSSGMLN 284
           +V + G+ +F LC G D  SSG L+
Sbjct: 739 QVIIEGVGVFSLCLGKDFASSGFLH 763


>At5g61080.1 68418.m07664 expressed protein predicted proteins,
           Arabidopsis thaliana; expression supported by MPSS
          Length = 348

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 181 GFIEQLESEADGDFDDADMSNLDDDRQAPPP 273
           G + +  S+ D DFDD  + ++D D +   P
Sbjct: 125 GLVPETASQIDNDFDDGGVVDMDLDNECLTP 155


>At1g74760.1 68414.m08662 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 255

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 106 RFFCHRCDIEFEDVLQDYTCPYC 174
           ++FC  C + ++D  + Y CPYC
Sbjct: 87  KYFCKICKL-YDDERKIYHCPYC 108


>At1g18910.1 68414.m02354 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 195

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 106 RFFCHRCDIEFEDVLQDYTCPYC 174
           +++C  C + F+D  + Y CPYC
Sbjct: 27  KYYCKICKL-FDDDREIYHCPYC 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,284,512
Number of Sequences: 28952
Number of extensions: 244438
Number of successful extensions: 860
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -