Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0814
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    28   1.8  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    27   4.1  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    26   7.2  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   9.6  

>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 535 VEISLHLKFVKMFVKLGSDCLTELCNGKRG*RSISIVLPFIHVMIIYY 678
           VE+ +     K FV   +  L   CNG+R  R ++I LP  + M   Y
Sbjct: 614 VEVVIEDTITKPFVSFQTAMLHTTCNGERRIRVLTISLPTTNSMTDLY 661


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 315 PIQNCYLSKLSLSIGGDGRRI*NTKKSIRKL 223
           P  NC+++K    I GD R+  +TK  +  L
Sbjct: 41  PCHNCFVAKRECIIAGDNRKKRHTKTYVEAL 71


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
 Frame = -3

Query: 404 LIIIYLDLMELMKMQEEVE*SVIIKRYCNRLFKIAICQSYRYQL-----EATV-AVFETQ 243
           +I++    +EL K  +++    +IK   N + K+ I +  RY       ++TV +     
Sbjct: 21  VIVVVTKNLELFKKYDDIN---LIKEAYNHVHKL-IQKDERYTAVFFAHDSTVFSYLGLS 76

Query: 242 KKAYEN*IFYTIKGIKAINMFFNFWLS-VEVTLLLRL 135
            KAY    +Y  K +KA+ +    W+S V +  LL +
Sbjct: 77  LKAYYGMDYYLHKNVKAVYVIHTDWMSKVAIRTLLSI 113


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 65  VTKKTLHPSLRLLCSSC 15
           +T+K   PS+R++C+ C
Sbjct: 765 ITRKATEPSIRIICNFC 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,294,681
Number of Sequences: 5004
Number of extensions: 68872
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)