Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0814
         (808 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016677-6|AAB66145.3|  340|Caenorhabditis elegans Hypothetical ...    31   1.3  
Z69384-3|CAA93418.1|  475|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>AF016677-6|AAB66145.3|  340|Caenorhabditis elegans Hypothetical
           protein ZK1240.2 protein.
          Length = 340

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +3

Query: 135 KSEE*GHFDAEPKVKEHIYRLNSFYCIE 218
           K+EE    DA PK   H Y L  F CIE
Sbjct: 78  KTEEKDSIDAPPKCASHQYNLAEFVCIE 105


>Z69384-3|CAA93418.1|  475|Caenorhabditis elegans Hypothetical
           protein T11G6.3 protein.
          Length = 475

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 156 FDAEPKVKEHIYRLNSFYCIEYSI--FVCFFLCFKYGDRRLQLITIALT 296
           FD+E    E +  L++ + I YSI  ++C  L   Y  RR+  + +AL+
Sbjct: 68  FDSEQSATEFLGALDTGFMITYSIGLYICGTLGDHYNPRRILALGMALS 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,958,525
Number of Sequences: 27780
Number of extensions: 375810
Number of successful extensions: 792
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)