Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0814
         (808 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17240.1 68414.m02100 leucine-rich repeat family protein cont...    31   1.2  
At1g04950.2 68414.m00493 TATA box-binding protein-associated fac...    29   4.8  
At1g04950.1 68414.m00492 TATA box-binding protein-associated fac...    29   4.8  
At5g38570.1 68418.m04664 F-box family protein contains F-box dom...    28   8.4  

>At1g17240.1 68414.m02100 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 729

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 598 SDNHYLTLQTF*QILNVTKSQHFNR-YSISPSFYV 497
           ++N+YL L  F    NVT +Q +N+ YS  P+ Y+
Sbjct: 549 TENNYLELPIFLNPNNVTTNQQYNKLYSFPPTIYI 583


>At1g04950.2 68414.m00493 TATA box-binding protein-associated factor
           (TAF) family protein contains Pfam profile: PF02969 TATA
           box binding protein associated factor
          Length = 549

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 617 LPLQSSVRQSLPNFTNILTNFKCNEISTFQSLFNFSIILRSV 492
           L   S +   +P FTN + +   N ++ F+ LFN   I+RS+
Sbjct: 201 LASDSGLHPLVPYFTNFIADEVSNGLNDFRLLFNLMHIVRSL 242


>At1g04950.1 68414.m00492 TATA box-binding protein-associated factor
           (TAF) family protein contains Pfam profile: PF02969 TATA
           box binding protein associated factor
          Length = 549

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 617 LPLQSSVRQSLPNFTNILTNFKCNEISTFQSLFNFSIILRSV 492
           L   S +   +P FTN + +   N ++ F+ LFN   I+RS+
Sbjct: 201 LASDSGLHPLVPYFTNFIADEVSNGLNDFRLLFNLMHIVRSL 242


>At5g38570.1 68418.m04664 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 379

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 416 NKMAAVHR-PIKIHLCIRLKKKDHVPSQNVK*W 511
           NK   +HR P+   LCI +    H+  + +K W
Sbjct: 61  NKKLPIHRAPVIERLCIHINSNPHIKPEYIKRW 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,152,548
Number of Sequences: 28952
Number of extensions: 318239
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)