Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0813
(796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 140 2e-34
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 31 0.25
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 29 0.77
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 1.3
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 1.3
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.4
SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo... 26 7.1
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 7.1
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 25 9.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 9.4
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 9.4
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 9.4
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 140 bits (340), Expect = 2e-34
Identities = 81/220 (36%), Positives = 127/220 (57%), Gaps = 1/220 (0%)
Frame = +1
Query: 109 YHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 288
+H + ATLK I RLKS+KNI+KIT+++K V+ K TRA+R ++A+ Y + + +
Sbjct: 24 FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVF 83
Query: 289 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA-ENIKVICVGDKSR 465
+ A PE+ K L VA +SD+GLCG +H+ +S++IR L +P EN + +G+K R
Sbjct: 84 KEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEKVR 142
Query: 466 GILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQ 645
L R + IG P+F +A Q+++ IL ++ ++YNKF S VS+
Sbjct: 143 TQLLRFCPESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFET 202
Query: 646 SDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEFSLALAV 765
LYT K+I + L+AY+ D +V Q EF+ A A+
Sbjct: 203 VMKNLYTTKAINESPNLSAYEVSD-EVHQPLMEFAFANAI 241
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 30.7 bits (66), Expect = 0.25
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Frame = +1
Query: 307 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 471
PPED P++L +T+ G+ GA+ TGV +N L E GA ++ +IC +
Sbjct: 70 PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128
Query: 472 LQRLYGKHIISVA 510
L +Y ++VA
Sbjct: 129 LMTVYSLGELAVA 141
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 29.1 bits (62), Expect = 0.77
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 550 SQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVL 729
S+ + IL + +FGS KII K +V S L + +I L +L +D+
Sbjct: 2456 SEFSVLILNAAVKFGSQKIIELKLSDIVCSIISTASLQKEVTIAENGILALGKALLADIP 2515
Query: 730 QSY 738
QS+
Sbjct: 2516 QSF 2518
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -2
Query: 426 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 292
ST+F+ A + GY +Y+ Q++V N Q+ V FG N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -2
Query: 426 STRFAETVADHFGYTSVYSSAQTSVR--GHSNKQLLGVIFGRCNLSP 292
ST+F+ A + GY +Y+ Q++V N Q+ V FG N +P
Sbjct: 109 STKFSAGDATNVGYNLLYNGTQSAVACPASDNDQVYQVYFGAGNGNP 155
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 482 CTESTSLVLLMRSDVSHLLSWTQVSWPLLSSPRDTSLVPERSF 610
C ++L L +S++ LS + +PL + RDT L+ +F
Sbjct: 172 CETDSALAQLFKSEIYQQLSDFRRDFPLSHALRDTMLIARLNF 214
>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
Mag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 228
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/80 (20%), Positives = 34/80 (42%)
Frame = +1
Query: 553 QLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVLQ 732
+L A+ + + I+N+FKS+ + Q P + + + + D L+
Sbjct: 53 ELIRAVASQQLHSKAANAIFNRFKSISNNGQFPTPEEIRDMDFEIMRACGFSARKIDSLK 112
Query: 733 SYTEFSLALAVVLRAEGGRL 792
S E +++ + + E RL
Sbjct: 113 SIAEATISGLIPTKEEAERL 132
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 340 AMTSDRGLCGAVHTGVSKVIRNRLSE 417
A+ SD +C V TG+S ++RLS+
Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -2
Query: 567 SSGQLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRF 415
SS ++ V + W + L +TND +++S+ DT R S DV+ F
Sbjct: 460 SSAKVASVLLNSW-SGLLALSTNDFQALRSIVDTLRVPSFAPRSDVIDLFF 509
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 9.4
Identities = 24/85 (28%), Positives = 39/85 (45%)
Frame = +2
Query: 398 SATVSANLVLRTSR*SVWEINLAVSCRDCTESTSLVLLMRSDVSHLLSWTQVSWPLLSSP 577
S+ S++ + +S S + S + +TS L S S L+ + ++ L+S
Sbjct: 83 SSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASS 142
Query: 578 RDTSLVPERSFTTSSSLWSRTPSPT 652
TS S TTSSSL S + + T
Sbjct: 143 SITSSSLASSSTTSSSLASSSTNST 167
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = -2
Query: 558 QLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGY 385
+L + ES+++T+ +T + + D R+I D D + +ET+A F Y
Sbjct: 425 KLWYLNESKFDTNPPPRSTMSCRKLSGIDDPFRYIVFNDIQDFIVCFESETIAFAFKY 482
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 163 KSVKNIQKITQSMKMVSAAKYTRAERDLK 249
+ VKN+Q S+K +SAA +TR +K
Sbjct: 958 QQVKNMQLELASLKQISAAFFTRIPLKIK 986
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,497,528
Number of Sequences: 5004
Number of extensions: 75469
Number of successful extensions: 235
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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