Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0813
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)             204   6e-53
SB_54647| Best HMM Match : Phage_tail_S (HMM E-Value=2.4)              33   0.35 
SB_29537| Best HMM Match : Ribosomal_L3 (HMM E-Value=0.61)             31   1.4  
SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_8673| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-38)                  29   4.3  
SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)       29   5.7  
SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            29   5.7  
SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)                   28   7.6  

>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score =  204 bits (498), Expect = 6e-53
 Identities = 91/205 (44%), Positives = 148/205 (72%), Gaps = 2/205 (0%)
 Frame = +1

Query: 148 ISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDDPK 327
           +S+RL+SVKNIQKIT+SMKMVSAAK+ RAE++LK+AR YG+GA   Y++ E+    +DPK
Sbjct: 62  VSLRLRSVKNIQKITKSMKMVSAAKFGRAEKELKSARAYGDGATALYDKVEIKQESEDPK 121

Query: 328 QLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGKHIISV 507
            L V ++SDRGLCG +H+G++K ++  ++   + N+ ++  GDK++ IL R  GK+++  
Sbjct: 122 HLIVVLSSDRGLCGGIHSGLAKAVKASIAGNPSRNVGIVSFGDKTKQILSRTLGKNMLMS 181

Query: 508 ANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESA 687
             ++G+ PP F +A+ LA  IL +G++F +G + YN F+SVVS+  S   +Y+  ++ +A
Sbjct: 182 FMDVGKKPPLFCEATFLAQEILDAGFDFNTGDMFYNVFRSVVSFRASTKSIYSFDNLNNA 241

Query: 688 S--KLTAYDSLDSDVLQSYTEFSLA 756
           +   +++YD LDS+V++ Y EF+LA
Sbjct: 242 ASDSMSSYDELDSEVIRCYQEFNLA 266


>SB_54647| Best HMM Match : Phage_tail_S (HMM E-Value=2.4)
          Length = 571

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
 Frame = +1

Query: 322 PKQLFVAMTSDRG-LCGAVHTGVSKV------IRNRLSEPGAENIKVICVGDKSRGILQR 480
           P++LF+   S  G +  AV+TG+S+V      +R    +     IK   + D+ +G  + 
Sbjct: 447 PRRLFIIDHSLEGWITNAVYTGISRVRLAGQIVRVIPPDDTPARIKRYAIDDRQKGRTKY 506

Query: 481 LYGKHIISVANEIGRLPPTFLDASQLATAILTSGY 585
               H+++V N +G +       +   T +L  GY
Sbjct: 507 TGPHHVLTVDNVLGMIADAEKKYTLCGTQLLLQGY 541


>SB_29537| Best HMM Match : Ribosomal_L3 (HMM E-Value=0.61)
          Length = 261

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = -2

Query: 741 RVGLEHVAVQRVVRSQLAGALNRLLSVEGQVGLGVRDHRLELVVNDLSGTKLVSRGEDSS 562
           RVG +  A  RVV  +++G+L+R   V    G   R + +  +   +S   LV RG+  S
Sbjct: 139 RVGTQISAAYRVVIIRISGSLSRAYLVGRMSGGMSRAYLVGRMSGSMSRVYLVGRGKHVS 198

Query: 561 GQLT 550
           G+++
Sbjct: 199 GRIS 202


>SB_56228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 969

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
 Frame = +1

Query: 322  PKQLFVAMTSDRG-LCGAVHTGVSKVIRNRLSEPGAEN-----IKVICVGDKSRGILQRL 483
            P++LF+   +  G +  AV+TG+ +V   RL    +E      IK   + D+ +G  +  
Sbjct: 842  PRRLFIIDHNLEGWIANAVYTGIFRV---RLQATPSEELIIARIKRYAIDDRQKGRTKYT 898

Query: 484  YGKHIISVANEIGRLPPTFLDASQLATAILTSGY 585
               H+++V + +G +  T    +     +L  GY
Sbjct: 899  GSHHVLTVDHVLGMIAETEKKCTVCGAQLLLQGY 932


>SB_8673| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-38)
          Length = 719

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 21/69 (30%), Positives = 31/69 (44%)
 Frame = -2

Query: 720 AVQRVVRSQLAGALNRLLSVEGQVGLGVRDHRLELVVNDLSGTKLVSRGEDSSGQLTCVQ 541
           AV   VR   +   +RLL +EG V     DH     +N+  GT  + R ++S      ++
Sbjct: 654 AVWDTVRLWASRTRHRLLGIEGAVS----DHSGGTTLNNTRGTATLIRVKESRVNNGVIE 709

Query: 540 ESRWETSDL 514
            S W  S L
Sbjct: 710 ASHWNNSCL 718


>SB_40817| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.6e-36)
          Length = 888

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
 Frame = -2

Query: 672 LLSVEGQVGLGVRDHRLELVVNDLSGTKLVSRGEDSSGQLTCVQE-----SRWETSDLIS 508
           LL +  QV    RDH    V    +G K+ S  E+S GQ + V       SR+E  D  +
Sbjct: 401 LLRITEQVKW-TRDHHETHVTTLPNGIKVAS--EESFGQFSTVGVVIDGGSRYEV-DHPN 456

Query: 507 NTNDVLSVQSLQDTARFISHTDHLDVL 427
               V+   + Q TA+F SH D +  L
Sbjct: 457 GVTHVIEKMAFQSTAKFPSHDDIMQEL 483


>SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 888

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
 Frame = +1

Query: 322  PKQLFVAMTSDRG-LCGAVHTGVSKVIRN----RLSEPGAEN-----IKVICVGDKSRGI 471
            P++LF+   S  G +  AV+TG+S+V       R++ P   +     IK   + D+ +G 
Sbjct: 754  PRRLFIIDHSLEGWITNAVYTGISRVRHTDQIVRVTPPPPPDNTPARIKRYAIDDRQKGR 813

Query: 472  LQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGY 585
             +     H+++V + +G +       +   T  L  GY
Sbjct: 814  TKYTGSHHLLTVYHVLGMIADAEKKCTVCGTQRLLQGY 851


>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 210 HHLHGLCDFLDIFHRFKTDGNGLQSSHIPVWL 115
           +H+   C+  + F+R +  G G    H+ VWL
Sbjct: 595 NHIRNRCNVENFFYRIEFQGRGTAHVHLLVWL 626


>SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)
          Length = 370

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -2

Query: 516 LISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVRGHSN 337
           LI N  DV      +D+   + HTD+  V  +R  E V DH   T+   + + S +  S+
Sbjct: 62  LIRNNADVDEGME-EDSQMPLDHTDNTPVTHSREFEAVDDHTPPTTPTETTRKSAKRQSD 120

Query: 336 KQ 331
            Q
Sbjct: 121 SQ 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,194,249
Number of Sequences: 59808
Number of extensions: 630192
Number of successful extensions: 1816
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1814
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)