Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0811
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    29   0.57 
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    27   3.0  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    27   4.0  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    27   4.0  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    27   4.0  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    26   5.3  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.3  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    25   9.3  

>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -2

Query: 412 SDQDMNGIASPS---RPAEIMPLSQRTQKPRYSP 320
           SD ++ G+  P    +PA  +PLS+R+  P Y+P
Sbjct: 30  SDPELIGLLKPDNVDKPANSIPLSKRSTSPSYAP 63


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 283 IRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHSYLGLIPNLSQFTTSE 444
           + L +    F   G   V G V +A+   +  RVK   ++LG  P +   T SE
Sbjct: 564 VELSISKNIFFIGGGKAVHGLVNLASSRNVSDRVKCMVNFLGTEPLVGLKTASE 617


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = -1

Query: 371 SGDNAAIPTNPKT-----TIFPSVKNSGAFNFNLIGLGSIFPDDALSVSPASNHHLI 216
           S +   IP+ P T      +  + KNS A + +L  +     +D  S+SPA +H +I
Sbjct: 449 SSNKRLIPSTPPTKKPINAVLDAAKNSAAKDLHLAKMKLNNKNDESSLSPAKSHAVI 505


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -2

Query: 388 ASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIG 209
           + PS+P + +P+S        +PP R   +S+   S L  +    L +FP P ++  Y  
Sbjct: 160 SKPSKPRKKVPVSHPLPP---TPPSREEHVSVPRESSLFTYEDDPLPSFPSPYMVDDYYT 216

Query: 208 SD 203
            D
Sbjct: 217 QD 218


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = -2

Query: 418 SGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSG-----LVLFFLMT 254
           S +  D  G  S   P+E+MPL  + +      P  +PG +++  +      L  FF+ +
Sbjct: 214 SPTSGDQTGNISFGLPSEVMPLFPQIEAVYEMYPHSLPGFNVNITTNSKDTRLARFFVSS 273

Query: 253 LLAF 242
           L+ F
Sbjct: 274 LIPF 277


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 702 GSWHLREQHEPHTEVLLSSPVLPQRRQEV 616
           G  HL+EQ     +  +S P+LP ++ E+
Sbjct: 98  GVKHLQEQSSKEIKNPISQPILPNKKDEI 126


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 337 KPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIGSD 203
           K  Y+P   I GL++ TLS     +LM L+  P   ++ +  G D
Sbjct: 50  KVLYAPRTTIEGLNLPTLSSSYYKWLMDLVNIPD-DVVQNCAGLD 93


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 783 RSGIEAFHVQYHPMERKRNHEK 718
           R G+  F  +   +ERKR HEK
Sbjct: 114 RDGVSPFSPEGEGLERKREHEK 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,118,635
Number of Sequences: 5004
Number of extensions: 66470
Number of successful extensions: 203
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)