Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0805
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    28   1.4  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   7.7  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   7.7  

>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +2

Query: 539 VVLRTCQIKSI*VVYYQRWQSVHLDKKNVIDMSIQIDFNIIV 664
           + LR   I+SI   Y    Q V+L+K+N+ID  I  D +++V
Sbjct: 135 IALREHGIESIVAPYEADAQLVYLEKENIIDGIITEDSDMLV 176


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 420 AQFYLWSRHSKGHINRSLNYTSTLLST 500
           A++YLW RH    +N +L     L+S+
Sbjct: 713 ARYYLWRRHFAESLNATLKAYRILISS 739


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 181 PLTAM*VQNCLTLPSFGMVWYVLV 252
           P+T +   N +T+PS G  W  L+
Sbjct: 621 PITEVMASNLITIPSIGFTWRKLL 644


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,040
Number of Sequences: 5004
Number of extensions: 49815
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)