Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0803
(788 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 36 0.009
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 31 0.25
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.3
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 3.1
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |... 27 3.1
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 27 4.0
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 27 4.0
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 26 5.4
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 5.4
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ... 26 5.4
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 26 7.1
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 9.4
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 9.4
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 35.5 bits (78), Expect = 0.009
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = +2
Query: 35 MGKGFNNYMCKKFFHPASRDNLKRVWMAEQKTDAYKKKQEELRLQYEKEQDLHE 196
MG G N KK +HP N ++VW EQ K+ E+LR + E+E+ L E
Sbjct: 1 MGGGDLNM--KKSWHPLLMRNQEKVWKDEQAHKEEMKRVEQLRREIEEERQLLE 52
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 30.7 bits (66), Expect = 0.25
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 503 QASTSTPEEKEEKPDVPTLMQQMRDTGLIMKPGALP-LTAAKVEDNDSTNLTEHD 664
+A TS +K K ++ +++ R T ++ A+ L AK E DSTNLT +
Sbjct: 436 EACTSRESQKTRKKNLKENIRKQRTTSTAIRDIAIKFLDDAKCETEDSTNLTNRE 490
>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -1
Query: 242 LNSI-CLYFLYLVMLCSHVDPVLFHIVIAILLVFSCMHLFSVLPSIPFSNC 93
LN+I C++++Y + LC+ + + L + CM S+L S NC
Sbjct: 36 LNTIVCIFYVYKIALCNE---YIRFLAKCFLYILRCMSTVSLLSSAHKMNC 83
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -1
Query: 212 LVMLCSHVDPVLFHIVIAILLVFSCMHLFSVLPSIPFSNCLLKRDGRIFYTYSY 51
+V +C+H L +V +L+ F M +SV+P + +L TYSY
Sbjct: 205 VVQICNHAR--LEDVVTEVLMFFDSMIRYSVIPKASLYDTVLILCSTYISTYSY 256
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +2
Query: 2 FRETQLVVKNKMGKGFNNYMCKKFFHPASRD 94
F E + V M F NYMC+K F ASR+
Sbjct: 496 FPEIRQSVVQLMIDPFGNYMCQKLFVYASRE 526
>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1032
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 242 NFMYEPPPGVKKEREREDNEPEYKFE 319
N+++ PPP K EDN PE+ FE
Sbjct: 169 NYIHVPPPSGKLCSLCEDNLPEWYFE 194
>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 424
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 159 NSSCFFLYASVFCSAIHTLFKLSLEAGWKNFLHI 58
NS+C L V C++I+ L +E W NFL +
Sbjct: 108 NSACLIL--GVVCTSIYLLGASCMEFIWDNFLQL 139
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = +2
Query: 110 WMAEQKTDAYKKKQEELRLQYEKEQDLHE 196
W +++ + +KK+EEL+ ++EK + +E
Sbjct: 59 WKKQEQEEINRKKEEELKSKFEKLRQKNE 87
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 177 FSYCNRNSSCFFLYASVFCSAIHTLF 100
FSYCN FFL+A+V + LF
Sbjct: 331 FSYCNFGIKQFFLFAAVMIYDLLLLF 356
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 2 FRETQLVVKNKMGKGFNNYMCKKFFHPAS 88
F ET + M F NY+C+K F AS
Sbjct: 377 FAETHPYLAVLMVDAFGNYLCQKLFEHAS 405
>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 144
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 17 LVVKNKMGKGF-NNYMCKKFFHPASRDNLKRVWMAEQKTDAYKKKQEELRLQYEKE 181
L++K K K F N +++ S + ++ + Y++ +E+ R+Q EKE
Sbjct: 39 LILKAKTKKHFYKNVRPEEYIKKGSGERKRKFSKKSHLQELYERSEEKRRIQQEKE 94
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 497 ALQASTSTPEEKEEKPDVPTLMQQMRDTGLIM 592
+L ++S P ++ E+ D P+L Q+RD ++
Sbjct: 103 SLLKNSSEPLDRTERKDFPSLAMQIRDANSLV 134
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 9.4
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Frame = +2
Query: 434 WGHINTDKECTMYTLSMSEARALQASTST--PEEKEEKPDVPTLMQQMRDTGLIMKPGAL 607
WG +N+ K S + A QAS S+ E PD +++ R T + +
Sbjct: 231 WGSLNSSKPKHALPPSYISSEAAQASRSSFQVERHRPTPDNSAVIEAARRTYSSISSSSS 290
Query: 608 PLTAAKVEDNDSTNLTEHDLIS-QLSK 685
P K + + TE IS QLSK
Sbjct: 291 PF-KKKTQSHLPNRTTEVPSISKQLSK 316
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Frame = +2
Query: 452 DKECTMYT-LSMSEARALQASTSTPEEKEEK----PDVPTLMQQMRDT 580
+K T T +S + + +TS+P ++EEK P+ P+++ Q ++T
Sbjct: 370 EKPVTSATEVSSEKVEKVDGNTSSPSKEEEKPSTEPEKPSVVTQRKET 417
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,423
Number of Sequences: 5004
Number of extensions: 53591
Number of successful extensions: 251
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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