Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0803
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756...    46   3e-05
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903...    40   0.002
09_06_0211 + 21601321-21601807,21601982-21602265,21603337-21603666     30   1.8  
01_05_0067 - 17799260-17799615,17799736-17800134,17800400-17800412     29   3.2  
03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771...    28   7.4  
03_06_0676 - 35460281-35460648,35462097-35462382                       28   9.7  

>06_03_1344 -
           29472139-29473292,29474478-29475386,29475504-29475618,
           29476017-29476218,29477177-29477296,29477431-29477582,
           29478177-29478461
          Length = 978

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
 Frame = +2

Query: 317 EWQRKYNAPRESYCKGDNEIRDQPFGILVRNVRCIKCHKWGHINTDKECTMYTLSM-SEA 493
           E++   NAPR    +     R +PFG+ VRNVRC++C  +GH + D+EC +  + M +E 
Sbjct: 177 EFEVLKNAPR---LETGAPARVKPFGVEVRNVRCLRCGNYGHQSGDRECPLKDVIMPNEE 233

Query: 494 RALQASTSTPEEKEEKPDVPTLMQQMRDTGLIMKPGALPLTAAKVEDNDSTNLTEHDLIS 673
             L+          +      L  ++R      KPG  P       D+ +  +   D+  
Sbjct: 234 SRLKRDDPLTAIMAQTDSSEPLKWELR-----QKPGMSPPRGGYNPDDPNQQIVAEDIFD 288

Query: 674 Q 676
           +
Sbjct: 289 E 289



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
 Frame = +2

Query: 14  QLVVKNKMGKGFNN-YMCKKFFHPASRDNLKRVWMAEQKTDAYKKKQEELRLQYEKEQDL 190
           ++ +K K G  +++ Y+ +K +HP S  N +R W+AEQ      ++QEE++ ++ +EQ+ 
Sbjct: 22  EVELKEKAGTAWSHSYLNQKPWHPLSYPNQRRKWIAEQIHANRARRQEEVQREFAQEQEF 81

Query: 191 HEN----XXXXXXXXXXXXXXNFMYEPPPGVKKE 280
                                +FMY  PPG   E
Sbjct: 82  FRQTALFSKKDKEKMEIMKAVSFMYVRPPGYNAE 115


>08_02_1147 -
           24688686-24689729,24689875-24690036,24690339-24690368,
           24690713-24690860,24691302-24691489
          Length = 523

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 16/44 (36%), Positives = 31/44 (70%)
 Frame = +2

Query: 56  YMCKKFFHPASRDNLKRVWMAEQKTDAYKKKQEELRLQYEKEQD 187
           ++ KK +H  S  N++RVW+AE+K    ++K +EL+ Q ++E++
Sbjct: 5   FLNKKGWHTGSLRNIERVWVAEEKEKEEQRKIQELKKQQDEERE 48


>09_06_0211 + 21601321-21601807,21601982-21602265,21603337-21603666
          Length = 366

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +2

Query: 479 SMSEARALQASTSTPEEKEE---KPDVPTLMQQMRDTGLIMKPGALP 610
           S  EAR L A    PEE+EE   +P+ P    +   T  +M P  LP
Sbjct: 71  SAEEARCLWAKLPAPEEEEEAGQQPERPPSSYRRPPTSTLMAPVGLP 117


>01_05_0067 - 17799260-17799615,17799736-17800134,17800400-17800412
          Length = 255

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 410 VRCIKCHKWGHINTDKECTMYTLSMSEARALQASTSTPEEKEEKPDVPTL 559
           V+C +C +WGHI+  +EC     ++ E     A TS+ +   +  D+ T+
Sbjct: 93  VQCFRCDEWGHIS--RECP----TLKEKAKANAVTSSNDSDSDGCDLLTM 136


>03_02_0348 +
           7709894-7709926,7710516-7710604,7711202-7711277,
           7712019-7712214,7712449-7712832,7712884-7714804,
           7714906-7714966,7715952-7716371
          Length = 1059

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 189 RSCSFSYCNRNSSCFFLYASVFCSAIHTLF 100
           + CS  YCNRN  CF++   V+ S +  ++
Sbjct: 7   QQCSTVYCNRN-LCFWIIGCVYTSPVDGMY 35


>03_06_0676 - 35460281-35460648,35462097-35462382
          Length = 217

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 86  SRDNLKRVWMAEQKTDAYKKKQEELRLQYEK 178
           S D+ ++V  AE   +A +K+ EEL L+Y++
Sbjct: 171 SEDHERKVLEAEAHVNALQKQSEELLLEYDR 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,666,518
Number of Sequences: 37544
Number of extensions: 313326
Number of successful extensions: 1017
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)