Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0803
         (788 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44200.1 68415.m05500 expressed protein                             46   2e-05
At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein...    42   4e-04
At2g44195.1 68415.m05498 hypothetical protein                          34   0.094
At2g21900.1 68415.m02602 WRKY family transcription factor contai...    30   2.0  
At3g22320.1 68416.m02819 DNA-directed RNA polymerase, putative s...    29   3.5  
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG...    28   6.1  
At5g15280.1 68418.m01790 pentatricopeptide (PPR) repeat-containi...    28   8.1  
At4g37730.1 68417.m05342 bZIP transcription factor family protei...    28   8.1  

>At2g44200.1 68415.m05500 expressed protein
          Length = 493

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/47 (46%), Positives = 32/47 (68%)
 Frame = +2

Query: 56  YMCKKFFHPASRDNLKRVWMAEQKTDAYKKKQEELRLQYEKEQDLHE 196
           ++ KK +H  S  N++ VW AEQK +A +KK EELRLQ  +E++  E
Sbjct: 5   FLNKKGWHTGSLRNIETVWKAEQKQEAEQKKLEELRLQILQERERSE 51


>At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 595

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
 Frame = +2

Query: 26  KNKMGKGFNN-YMCKKFFHPASRDNLKRVWMAEQKTDAYKKKQEELRLQYEKEQDLHEN- 199
           K K G  +++ ++ +K +HP S  N +R W+AEQ    + ++ EE+  ++ +EQ+  +  
Sbjct: 31  KTKSGTAWSHSFLNQKPWHPLSYPNQRRKWIAEQTHAQHDRRAEEVAREFAQEQEFFKQA 90

Query: 200 ---XXXXXXXXXXXXXXNFMYEPPPGVKKEREREDNEPEYKFEWQRKYNAPRESYCKGDN 370
                            +FMY  PPG   E  +     EYK E  +   +  +     DN
Sbjct: 91  ALISKKEREKIETMKAVSFMYVRPPGYDPESAK---AAEYKDEKHKGQGSSTQDPVADDN 147



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
 Frame = +2

Query: 317 EWQRKYNAPR-ESYCKGDNEIRDQPFGILVRNVRCIKCHKWGHINTDKECTMYTLSM--S 487
           E++   NAPR E+   G    R +PF + VRNV+C++C  +GH + D++C +    M   
Sbjct: 183 EFEVLKNAPRMETGIPG----RVKPFAVEVRNVKCLRCGNFGHQSGDRDCPLKDAVMPNE 238

Query: 488 EARALQASTSTPEEKEEKPDVPTLMQQMRDTGLIMKPGALPLTAAKVEDNDSTNLTEHDL 667
           E R  +    T       P  P   +      L  KPG  P       D+ +  +   D+
Sbjct: 239 ELRLKRDDPLTAIIAHTDPSEPLKWE------LKQKPGLSPPRGGFDPDDPNQQIVAEDI 292

Query: 668 ISQ 676
             +
Sbjct: 293 FDE 295


>At2g44195.1 68415.m05498 hypothetical protein
          Length = 107

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = +2

Query: 56  YMCKKFFHPASRDNLKRVWMAEQKTDAYKKKQEE 157
           ++ KK +H  S  N+++VW AEQK +A ++K EE
Sbjct: 5   FLNKKGWHTGSIRNVEKVWKAEQKHEAEQEKIEE 38


>At2g21900.1 68415.m02602 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 202

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 257 PPPGVKKEREREDNEPEY---KFEWQRKYNAPRESYCKGDN 370
           P   VKK+ ER+ N P+Y    +E +  + +P   YC  D+
Sbjct: 137 PDCNVKKKIERDTNNPDYILTTYEGRHNHPSPSVVYCDSDD 177


>At3g22320.1 68416.m02819 DNA-directed RNA polymerase, putative
           similar to SP|P19388 DNA-directed RNA polymerase II 23
           kDa polypeptide (EC 2.7.7.6) {Homo sapiens}; contains
           Pfam profiles PF03871: RNA polymerase Rpb5 N-terminal
           domain, PF01191: RNA polymerase Rpb5 C-terminal domain
          Length = 205

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 554 TLMQQMRDTGLIMKPGALPLTAAKVEDNDSTNLTEHDLISQLSKKQRKS 700
           TLMQ +RD G  +    L +T  +       N+   DL++  +K+   S
Sbjct: 16  TLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNS 64


>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
           identical to P-glycoprotein GI:3849833 from [Arabidopsis
           thaliana]; homologous to mammalian mdr gene,contains
           ATP-binding cassette; related to multi drug resistance
           proteins
          Length = 1286

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -2

Query: 439 SPLMTLNASYIPDKYTKRLISDFIVS-FTIAFSRS 338
           SP+MT N+SY    Y++RL SDF  S F+++   S
Sbjct: 634 SPIMTRNSSYGRSPYSRRL-SDFSTSDFSLSIDAS 667


>At5g15280.1 68418.m01790 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1227

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +2

Query: 320 WQRKYNAPRESYCKGDNEIR-DQPFGILVR-NVRC 418
           + + YN   + YCKG+N ++ ++  G++VR N+ C
Sbjct: 837 YNKIYNVMFQGYCKGNNWMKVEEVLGLMVRKNIIC 871


>At4g37730.1 68417.m05342 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 305

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = +2

Query: 14  QLVVKNKMGKGFNNYMCKKFFHPASRDNLKRVWMAEQKTDAYKKKQEE 157
           QL      G G NN+  KK   P   D  KR  M   +  A + +  +
Sbjct: 169 QLTAITNFGSGENNHNRKKMIQPEMTDERKRKRMESNRESAKRSRMRK 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,864,814
Number of Sequences: 28952
Number of extensions: 269771
Number of successful extensions: 930
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)