Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0802
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A |Schi...    48   2e-06
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    31   0.14 
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    28   1.7  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    27   2.2  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.0  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    27   3.0  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    27   3.9  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    26   6.9  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   6.9  

>SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
 Frame = +3

Query: 93  IRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQESLMMVP 272
           +R + IKT VVKRI              + R+Q   D G+D   I  Q+ VL++ L  +P
Sbjct: 5   VRSLVIKTNVVKRIIKDVELAHIDINEAEKRVQSKIDNGEDSAEIEHQKFVLKKHLEALP 64

Query: 273 DCQRRLIKAYTDLK-----TTLETEQDLKEHEEYI-TAEQVLKDAEPQLP 404
           D   RL  A  DL+     +  E   +L++  EY+  A++V++  +   P
Sbjct: 65  DALVRLRNATNDLESISSDSAYEGTPELEQANEYLEKAKEVIEKEQTNFP 114


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 526 HHRQPQHKSHHQNKCHQEYNKHKFRHSKDYIRRPRDQ 636
           HHR P+ K HH+    +E+  HK    K++ + P+D+
Sbjct: 355 HHRGPEDKEHHKGPKDKEH--HKGPKDKEHHKGPKDK 389



 Score = 29.9 bits (64), Expect = 0.42
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 526 HHRQPQHKSHHQNKCHQEYNKHKFRHSKDYIRRPRDQ 636
           HH+ P+ K HH+    +E+  HK    K++ + P+D+
Sbjct: 373 HHKGPKDKEHHKGPKDKEH--HKGPKDKEHHKGPKDK 407



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 526 HHRQPQHKSHHQNKCHQEYNKHKFRHSKDYIRRPRDQ 636
           HH+ P+ K HH+    +E+  HK    K++ + P+++
Sbjct: 391 HHKGPKDKEHHKGPKDKEH--HKGPKDKEHHQGPKEK 425


>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 580 YNKHKFRHSKDYIRRPRDQIRAPSYMPPQSPAY 678
           Y++H    SKD   RP  Q+   ++M  Q PA+
Sbjct: 280 YSRHSTEESKDGQSRPSHQLLRYAFMAKQPPAH 312


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = +3

Query: 252 ESLMMVPDCQRRLIKAYTDLKTTLETEQDLKEHEEYITAEQVLKDAEPQLPAIES*LSPF 431
           E+L  VPD    LI+A  +LKT  + E   KE EE   + Q  +  E ++  +   L  +
Sbjct: 98  ETLGEVPDPYPLLIEAANNLKTQKQIEDLKKEKEEMEGSLQGKEKLEREVENLRKELDKY 157

Query: 432 YKLI 443
             L+
Sbjct: 158 KDLV 161


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 290 NQSIYRSQNYFRNRTGPQRTRGIHY 364
           +Q+I+++  Y  ++TGP R R +HY
Sbjct: 118 HQAIWQTLRYAYSQTGPLRHRRLHY 142


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = +1

Query: 520 SLHHR---QPQHKSHHQNKCHQEYNKHKFRHSKDY 615
           +LHHR    P HK HH+      Y+ H F +   Y
Sbjct: 172 ALHHRWLYAPLHKLHHKWIVPTPYSSHAFHYLDGY 206


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +3

Query: 216 EHNIRKQEEVLQESL-MMVPDCQRRLIKAYTDLKTTLETEQDLKEHEEYITAEQVLKDAE 392
           E  + K  ++ +E L + + DC++++++ +  L  + E  +      E I  EQVL   E
Sbjct: 302 ETELEKLHQLKKEHLPIFLEDCRQQILQLWDSLFYSEEQRKSFTPMYEDIITEQVLTAHE 361

Query: 393 PQLPAIES*LS 425
             +  +E+ +S
Sbjct: 362 NYIKQLEAEVS 372


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +3

Query: 174 QKNRIQRIK-DEGQDEHNIRKQEEVLQESLMMVPDCQRRLIKAYTDLKTTLETEQDLKEH 350
           QK+  +R K D+G +E N  +QE++L   L  + D      K  T  K+++++  + KE+
Sbjct: 74  QKHATERQKLDKGDEETNETQQEDLLNTLLQQMED-----TKITTAEKSSVQSSLNTKEN 128


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +3

Query: 171 LQKNRIQRIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLIKAYTDLKTTLETEQDLKE 347
           LQ+ +++R   E Q E  +  +   L+  L+ + +  + LIK   D+ +  +  Q LKE
Sbjct: 639 LQQLQLERANFE-QKESTLSDENNDLRTKLLKLEESNKSLIKKQEDVDSLEKNIQTLKE 696


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,472
Number of Sequences: 5004
Number of extensions: 38762
Number of successful extensions: 132
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)