Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0802
         (771 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL) ide...    76   3e-14
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi...    32   0.48 
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa...    31   1.1  
At4g11720.1 68417.m01870 hypothetical protein                          30   1.9  
At3g13190.2 68416.m01651 myosin heavy chain-related contains wea...    30   1.9  
At3g13190.1 68416.m01650 myosin heavy chain-related contains wea...    30   1.9  
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ...    29   3.4  
At5g55020.1 68418.m06853 myb family transcription factor (MYB120...    29   3.4  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    29   3.4  
At4g04780.1 68417.m00700 expressed protein very low similarity t...    29   4.5  
At1g15730.1 68414.m01887 PRLI-interacting factor L, putative str...    29   4.5  
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha...    28   7.9  

>At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL)
           identical to cDNA tubulin folding cofactor A,
           GI:20514256, SP|O04350 Tubulin-specific chaperone A
           (Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin
           cofactor A homolog) {Arabidopsis thaliana}
          Length = 113

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 2/106 (1%)
 Frame = +3

Query: 93  IRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDEGQDEHNIRKQEEVLQESLMMVP 272
           IR +KIKT   KRI             +  +   +KD+G D +++++QE VL ES MM+P
Sbjct: 4   IRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMIP 63

Query: 273 DCQRRLIKAYTDLKTTLE--TEQDLKEHEEYITAEQVLKDAEPQLP 404
           DC +RL  A  DLK+TL    E D KE  E   A++ + D E Q P
Sbjct: 64  DCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVEKQFP 109


>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
           protein associated factor (GI:2827282) [Homo sapiens];
           similar to Transcription initiation factor TFIID 150 kDa
           subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
           [Drosophila melanogaster]
          Length = 1390

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = +3

Query: 240 EVLQESLMMVPDCQRRLIKAYTDLKTTLETEQDLKEHEEYITAEQVLKDAEP 395
           +VL + L +  D ++R I  YT+L+ ++     +  H E +  E VL D EP
Sbjct: 24  KVLHQKLFLSIDFKKRQIYGYTELEVSVPDIGIVGLHAENLGIESVLVDGEP 75


>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 Zinc
           finger, C3HC4 type (RING finger)
          Length = 496

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
 Frame = +1

Query: 508 HSLMSLHHRQPQHKSHHQNKCHQEYNKH----KFRHSKDYIRRP---RDQIRAPSYMPPQ 666
           HS    HH    H  HH +  H  ++ H    K       +  P   R + RAPS  PP 
Sbjct: 328 HSKHHHHHHHHHHHHHHHHHNHHHHHHHNLSPKMAPEVSPVASPAPHRSRKRAPSAPPPC 387

Query: 667 SP 672
           +P
Sbjct: 388 NP 389


>At4g11720.1 68417.m01870 hypothetical protein
          Length = 658

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 514 LMSLHHRQPQHKSHHQNKCHQEYNKHKFRHSKD 612
           +++ HH   +H+ HH N   + + +HK  H +D
Sbjct: 567 VVNRHHHHHKHR-HHHNHHRRTHQRHKHHHGQD 598


>At3g13190.2 68416.m01651 myosin heavy chain-related contains weak
           similarity to Myosin II heavy chain, non muscle
           (Swiss-Prot:P05659) [Acanthamoeba castellanii]
          Length = 316

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
 Frame = +3

Query: 30  LKIALKKKTRSIIQQEMADPRIRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDE- 206
           +K A+K K  ++++ E A   + Q+  + G+ + +               + ++ +  E 
Sbjct: 53  IKNAVKTKIEALLELEEAKKTVEQLSQELGIKRNMINDEKDLDL-----SSSVRVVTSEL 107

Query: 207 GQDEHNIRKQEEVLQESLMMVPDCQRRLI---KAYTDLKTTLETEQDLKEHEEYITAEQV 377
           G  + +I +  E   E  M++   +  L    KA+++LK   E EQ  ++H+     ++ 
Sbjct: 108 GVAKESIHRVAEEESELCMLMESLKLELQNVEKAHSELK---EIEQRERDHQAIEDLKKE 164

Query: 378 LKDAEPQLPAIE 413
            KDA+ QL  +E
Sbjct: 165 TKDAKTQLSLLE 176


>At3g13190.1 68416.m01650 myosin heavy chain-related contains weak
           similarity to Myosin II heavy chain, non muscle
           (Swiss-Prot:P05659) [Acanthamoeba castellanii]
          Length = 316

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
 Frame = +3

Query: 30  LKIALKKKTRSIIQQEMADPRIRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQRIKDE- 206
           +K A+K K  ++++ E A   + Q+  + G+ + +               + ++ +  E 
Sbjct: 53  IKNAVKTKIEALLELEEAKKTVEQLSQELGIKRNMINDEKDLDL-----SSSVRVVTSEL 107

Query: 207 GQDEHNIRKQEEVLQESLMMVPDCQRRLI---KAYTDLKTTLETEQDLKEHEEYITAEQV 377
           G  + +I +  E   E  M++   +  L    KA+++LK   E EQ  ++H+     ++ 
Sbjct: 108 GVAKESIHRVAEEESELCMLMESLKLELQNVEKAHSELK---EIEQRERDHQAIEDLKKE 164

Query: 378 LKDAEPQLPAIE 413
            KDA+ QL  +E
Sbjct: 165 TKDAKTQLSLLE 176


>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 675

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 619 ECSPCCGETCACCILGDIC-FDDD 551
           +CSPCC      C+ GD C FD D
Sbjct: 381 KCSPCCYFATQSCMKGDDCPFDHD 404


>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 523

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 526 HHRQPQHKSHHQNKCHQEYNKHKFRHSKDYIRRPRDQIRAPSYMPPQSP 672
           H +Q QH  HH +  HQ+  +H+    + Y +    Q   PS  P  SP
Sbjct: 153 HQQQQQHNHHHHH--HQQQQQHQ----QMYFQPQSSQRNTPSSSPLPSP 195


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 502 NMHSLMSLHHRQPQHKSHHQNKCHQEYNKHKFRHS 606
           + HS    H    QH   H+++ H E++ H   HS
Sbjct: 571 HQHSDSHKHEEHHQHSDSHKHEEHHEHDHHHHSHS 605



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = +1

Query: 499 TNMHSLMSLHHRQPQHKSHHQNKCHQEYN------KHKFRHSKDY 615
           T+ HS  S  H+  +H  H  +  H+E++      KH+  H  D+
Sbjct: 555 THSHSHQSHSHKNEEHHQHSDSHKHEEHHQHSDSHKHEEHHEHDH 599


>At4g04780.1 68417.m00700 expressed protein very low similarity to
           SP|Q13503 RNA polymerase II holoenzyme component SRB7
           (RNAPII complex component SRB7) {Homo sapiens}
          Length = 381

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/63 (22%), Positives = 32/63 (50%)
 Frame = +3

Query: 213 DEHNIRKQEEVLQESLMMVPDCQRRLIKAYTDLKTTLETEQDLKEHEEYITAEQVLKDAE 392
           +EH  +  +E L + + MV +  +R+++  +DL+  +    +L         E+++K  E
Sbjct: 59  EEHLFKWVDEALLDEIKMVNEKCKRVVENISDLRMNVMANMELLNKNAKQMEEELIKKME 118

Query: 393 PQL 401
            +L
Sbjct: 119 GEL 121


>At1g15730.1 68414.m01887 PRLI-interacting factor L, putative strong
           similarity to PRLI-interacting factor L GI:11139268 from
           [Arabidopsis thaliana]; contains Pfam profile PF02492:
           Cobalamin synthesis protein/P47K
          Length = 448

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 532 RQPQHKSHHQNKCHQEYNKHKFRHSKDY 615
           R+     HH + CH  +N+H+  H  ++
Sbjct: 314 REGHDDHHHGHDCHDHHNEHEHEHEHEH 341


>At4g36080.1 68417.m05136 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF00454: Phosphatidylinositol 3-
            and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
          Length = 3839

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
 Frame = +3

Query: 51   KTRSIIQQEMADPRIRQIKIKTGVVKRIXXXXXXXXXXXXLQKNRIQ-RIKDEGQDEHNI 227
            KT + +Q+   DP +        +++R+             Q  RI+    D G    NI
Sbjct: 2273 KTLAEVQKHFLDPYVL-----VHILQRLSRDLGLAAGAHPRQSQRIESESADVGAVVSNI 2327

Query: 228  RKQEEVLQESLMMVPDCQRRLIKAYTDLKTTLETEQDL 341
            +   E++ E +M++ DC+R + +    L +   T+  L
Sbjct: 2328 KLVLELIDERVMLLADCKRPVTQILNTLLSEKGTDSSL 2365


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,036,387
Number of Sequences: 28952
Number of extensions: 205001
Number of successful extensions: 803
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)