Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0800
         (665 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-4|AAA68738.1|  646|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z49128-3|CAA88958.2|  855|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z92838-4|CAB07410.1| 1012|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z36719-1|CAA85311.2|  576|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>U29380-4|AAA68738.1|  646|Caenorhabditis elegans Hypothetical
           protein ZK546.5 protein.
          Length = 646

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 369 RKNVRMLNSRKSRRRDPGKKTKKTTPELQS 280
           RKNV + ++RK  R D G+K K+   E+QS
Sbjct: 82  RKNVALKHTRKDVRDDEGEKVKREGYEVQS 111


>Z49128-3|CAA88958.2|  855|Caenorhabditis elegans Hypothetical
           protein M03C11.3 protein.
          Length = 855

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 387 KYLHFTRKNVRMLNSRKSRRRDPGKKTKKTTPELQSDF 274
           K +H  R+ ++    ++ R R P +K+   TP   S F
Sbjct: 752 KLMHAERERIKRETDKRIRNRQPAQKSAAATPAHSSSF 789


>Z92838-4|CAB07410.1| 1012|Caenorhabditis elegans Hypothetical
           protein T03D8.5 protein.
          Length = 1012

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 329 VETPEKRQKRQHRNCKAILTE*IRPCVSDEKYTFRHSFNVLN 204
           V+ P+K      R+ ++ +T   +  ++ +K T RHSF  LN
Sbjct: 470 VKPPQKNTMHSSRSLQSTVTTSTKVTINSKKDTERHSFYFLN 511


>Z36719-1|CAA85311.2|  576|Caenorhabditis elegans Hypothetical
           protein C06C3.3 protein.
          Length = 576

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 372 TRKNVRMLNSRKSRRRDPGKKTKKTTPELQSDFDRIDP 259
           T K  R+LNS +S RR+P    K  + E +S  + + P
Sbjct: 250 TTKLPRLLNSNRSFRREPVSAQKPPSEEPRSTSENLPP 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,601,511
Number of Sequences: 27780
Number of extensions: 244913
Number of successful extensions: 498
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)