Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0796
(831 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 29 1.1
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 29 1.1
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 28 1.4
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 1.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.9
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch... 28 1.9
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 27 2.5
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 27 3.3
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 27 3.3
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 26 7.5
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe... 25 10.0
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 25 10.0
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 10.0
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 28.7 bits (61), Expect = 1.1
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +2
Query: 68 SKQSTSERYSTESS-VDPTTTAAGAKSNYSTATKSITTAVAATTESP-ASFATAEPIF 235
S +S++ Y+T S+ +P+T + S T + T ++TE+P +S T+ PI+
Sbjct: 1438 SGESSAFTYTTSSTQYEPSTVVTTSYYTTSVYTSAPATETVSSTEAPESSTVTSNPIY 1495
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 35 VVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTES 202
VV E S +R K ST++ +ST +PTTTA + S S T + + + S
Sbjct: 132 VVYEYHPSSERHK-STNDTWSTNLPTNPTTTAIYSTSGSSNITTPYSNRITNSNTS 186
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +1
Query: 733 ERWNTMSEKEKQRFHE--MAEQDKHRSTWRCRT 825
+ WN ++E+EK+ +HE +A ++K R R R+
Sbjct: 231 DTWNNLTEEEKKPYHEGLLAAREKAREARRRRS 263
>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 437 NTAATTNSTRTHSSCSATTDTGSI 508
++AAT+ STR SS A+T +G+I
Sbjct: 176 SSAATSTSTRVSSSAKASTSSGAI 199
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +2
Query: 68 SKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 211
S STS ST SS T+++ + S+ STA+ S +++ ++ S +S
Sbjct: 233 SSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSS 280
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +2
Query: 77 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 211
STS Y + SSV ++++ + S+ + + S++T+ +T S +S
Sbjct: 204 STSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSS 248
>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 383
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 437 NTAATTNSTRTHSSCSATTDTGSI 508
++AAT+ STR SS A+T +G+I
Sbjct: 176 SSAATSTSTRVSSSAKASTSSGAI 199
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 430 LNQYSSNNKLYKNTFKLFSNNRYRQHYRGNLPLYRSCSNRHSSKLY 567
L +YS + + +TF SN + + YR N P+ +S S S LY
Sbjct: 100 LIEYSGSAFMPMSTFTPQSNRKPTEAYRRNSPVKKSFSRPSHSLLY 145
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 68 SKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITT 178
SK+ TSER +SSV P+ + S+ S K + T
Sbjct: 96 SKEITSERKRAKSSVSPSYLTDSSPSDLSVENKVLLT 132
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 27.1 bits (57), Expect = 3.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 733 ERWNTMSEKEKQRFHEMAEQDKHR 804
+RW ++ E++ + E A QDK R
Sbjct: 52 KRWKELTSTEREPYEEKARQDKER 75
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 691 RVFFLCSSRHVCTKNA*AVMRPRGL 617
R +F C+S H CT + A++ GL
Sbjct: 254 RAYFSCTSAHTCTGDGNAMVSRAGL 278
>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -3
Query: 817 ISKSNDACPVQPSHGTAVFLFPTLYSTSLRTFRECCKYNTDI 692
I+K + CP +PS F Y L+ F E + T+I
Sbjct: 262 ITKLSVICPKRPSSTNVAFFGVPSYENVLKAFSETRSHLTEI 303
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.4 bits (53), Expect = 10.0
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +2
Query: 38 VAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFA 217
V S+ S + E +SSV +T+A + + + S T A T P
Sbjct: 821 VNPSLDSEPVQLSNMEEPQHQDSSVVDVSTSASQRGSPVLSDLSKLTGSARNTAEPVENT 880
Query: 218 TAEPI 232
+AEPI
Sbjct: 881 SAEPI 885
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 10.0
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +2
Query: 56 SRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTES--PASFATAEP 229
S R++ +TS YS+ +V +T S+ STA+ I ++ ++ T S P +F+++
Sbjct: 907 SSSRNEGTTS--YSSNITVTSSTLKPSLTSSVSTASSYIASSASSNTLSTEPKTFSSSST 964
Query: 230 I 232
+
Sbjct: 965 L 965
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,031,223
Number of Sequences: 5004
Number of extensions: 35823
Number of successful extensions: 221
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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