Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0796
(831 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012 34 0.16
04_04_0224 - 23738105-23738273,23738364-23738472,23738702-237388... 33 0.21
04_04_0223 - 23723055-23723223,23723316-23723424,23723588-237236... 32 0.64
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 31 0.85
03_02_0382 - 7958634-7959272,7959358-7959583,7959725-7959810,795... 31 0.85
03_01_0185 - 1485023-1485733 30 2.6
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 29 3.4
06_01_0326 + 2372176-2373057,2373146-2373610 29 4.5
01_06_0626 + 30701538-30701939 29 6.0
04_04_0887 + 29095087-29096166 28 7.9
01_05_0743 + 24835349-24836009,24836925-24837068,24837154-248373... 28 7.9
>12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012
Length = 296
Score = 33.9 bits (74), Expect = 0.16
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 59 RKRSKQSTSERYSTESSVDPTT-TAAGAKSNYSTATKSITTAVAATTESPASFATAEP 229
R+ +K+ST + S+ S AA A ++ S+ T + TTA ++ +PA+ A A+P
Sbjct: 144 RRNTKRSTKKSSSSSSRQGGGAGNAAAAATSSSSTTSTSTTATTSSAAAPAAAAAADP 201
>04_04_0224 -
23738105-23738273,23738364-23738472,23738702-23738804,
23738895-23738926,23739342-23739592,23739639-23739754,
23740271-23740526,23740760-23740847,23740985-23741062,
23741238-23741313,23741532-23741590,23742639-23742711
Length = 469
Score = 33.5 bits (73), Expect = 0.21
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +1
Query: 451 NKLYKNTFKLFSNNRYRQHYRGNLPLYRSCSNRHSSKLYSKQQ*IRPGCPVQGHTTSP 624
++L K +F N Y +Y G+LP +N +S+ + +R G P+ SP
Sbjct: 290 SELIKGSFDFIGLNYYTSNYAGSLPPSNGLNNSYSTDARANLTAVRNGIPIGPQAASP 347
>04_04_0223 -
23723055-23723223,23723316-23723424,23723588-23723690,
23723781-23723812,23724024-23724241,23724322-23724437,
23725055-23725310,23725719-23725806,23725928-23726005,
23726199-23726274,23726525-23726583,23727715-23728066
Length = 551
Score = 31.9 bits (69), Expect = 0.64
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +1
Query: 451 NKLYKNTFKLFSNNRYRQHYRGNLPLYRSCSNRHSSKLYSKQQ*IRPGCPVQGHTTSP 624
+KL K F N Y +Y NLP +N +++ + +R G P+ SP
Sbjct: 372 SKLVKGAFDFIGLNYYTANYADNLPPSNGLNNSYTTDSRANLTGVRNGIPIGPQAASP 429
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 715 ILEKCAERWNTMSEKEKQRFHEMAEQDKHR 804
I +K ERW M+ +EKQ + E ++ DK R
Sbjct: 588 IAKKLGERWQKMTAEEKQPYVEQSQVDKKR 617
>03_02_0382 -
7958634-7959272,7959358-7959583,7959725-7959810,
7959909-7959989,7960102-7960200,7960348-7960466,
7960557-7960677,7960831-7960881,7961041-7961142,
7962610-7962717,7962877-7962962,7963353-7963449
Length = 604
Score = 31.5 bits (68), Expect = 0.85
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 41 AESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNY-STATKSITTAVAATTESPASFA 217
AE++++ + K++ ER T+ + AA A S ST T + VAA +P + A
Sbjct: 487 AEALEALELEKKTVEERRKTKEETAAVSGAADAASGVTSTVTPAAGAGVAAGAAAPGAGA 546
Query: 218 TA 223
TA
Sbjct: 547 TA 548
>03_01_0185 - 1485023-1485733
Length = 236
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 77 STSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPASFATAE 226
S R S ++ P TT ++ +TAT + TT V T +P + A+
Sbjct: 35 SVVSRLSAAGNISPATTTPPTMTSSATATSAKTTRVTVPTPAPNTVHDAD 84
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 29.5 bits (63), Expect = 3.4
Identities = 8/24 (33%), Positives = 19/24 (79%)
Frame = +1
Query: 727 CAERWNTMSEKEKQRFHEMAEQDK 798
C E+WNTM+ +E+ +++++A + +
Sbjct: 84 CGEKWNTMTFEERVKYYDIATEKR 107
>06_01_0326 + 2372176-2373057,2373146-2373610
Length = 448
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = -1
Query: 123 VVGSTDDSVEYRSLVDCFDRFLDLTDSATTKILNTNEH 10
V+GS++ +++ S+ +C D +D+TD +T I +N H
Sbjct: 252 VMGSSNIWIDHVSMSNCSDGLIDITDGSTA-ITISNSH 288
>01_06_0626 + 30701538-30701939
Length = 133
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 53 KSRKRSKQSTSERYSTESSVDPTTTAAGAKSN--YSTATKSITTAVAATTESPASFA 217
K K + TS + + + P+ TA G ++ ++TAT S+ + T+ SP++ A
Sbjct: 52 KHEKPTTTCTSTNPMSTTVMPPSLTATGTDTSDHHATATASVFNGLGRTSSSPSNVA 108
>04_04_0887 + 29095087-29096166
Length = 359
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 440 TAATTNSTRTHSSCSATTDTGSIT 511
T AT RTH S SA+ TG++T
Sbjct: 44 TTATWRRARTHPSASASASTGTLT 67
>01_05_0743 +
24835349-24836009,24836925-24837068,24837154-24837306,
24837627-24837742,24837826-24837993,24838610-24838737,
24838827-24838926,24839119-24839205
Length = 518
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +1
Query: 430 LNQYSSNNKLYKNTFKLFSNNRYRQHYRGNLPLYRSCSNRHSSKLYSKQQ*IRPGCPVQG 609
+ Q+ + NKL K K+ + N + G ++RS +S + ++ +R G P G
Sbjct: 343 MKQFRAMNKLKKVALKVVAENLSDEEITGLKEMFRSLDTDNSGTITLEE--LRSGLPKLG 400
Query: 610 HTTSPAVA*QLMHS 651
S + QLM +
Sbjct: 401 TKISESEIRQLMEA 414
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,207,734
Number of Sequences: 37544
Number of extensions: 232225
Number of successful extensions: 1000
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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