Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0796
(831 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X62534-1|CAA44395.1| 209|Homo sapiens HMG-2 protein. 63 1e-09
M83665-1|AAA58659.1| 209|Homo sapiens high mobility group 2 pro... 63 1e-09
BT019783-1|AAV38586.1| 208|Homo sapiens high-mobility group box... 63 1e-09
BT019782-1|AAV38585.1| 209|Homo sapiens high-mobility group box... 63 1e-09
BC100019-1|AAI00020.1| 209|Homo sapiens HMGB2 protein protein. 63 1e-09
BC001063-1|AAH01063.1| 209|Homo sapiens high-mobility group box... 63 1e-09
BX537505-1|CAD97768.1| 127|Homo sapiens hypothetical protein pr... 62 2e-09
L05085-1|AAC15850.1| 109|Homo sapiens non-histone chromosomal p... 58 3e-08
BC070482-1|AAH70482.1| 200|Homo sapiens HMGB3 protein protein. 58 3e-08
Y10043-1|CAA71143.1| 200|Homo sapiens high mobility group prote... 56 2e-07
X12597-1|CAA31110.1| 215|Homo sapiens protein ( Human mRNA for ... 54 6e-07
U51677-1|AAB08987.1| 215|Homo sapiens non-histone chromatin pro... 54 6e-07
EU012027-1|ABS29271.1| 215|Homo sapiens high-mobility group box... 54 6e-07
EF157968-1|ABM47301.1| 215|Homo sapiens high mobility group box... 54 6e-07
CR456863-1|CAG33144.1| 215|Homo sapiens HMGB1 protein. 54 6e-07
BT020159-1|AAV38961.1| 215|Homo sapiens high-mobility group box... 54 6e-07
BT006940-1|AAP35586.1| 215|Homo sapiens high-mobility group box... 54 6e-07
BC141844-1|AAI41845.1| 215|Homo sapiens high-mobility group box... 54 6e-07
BC067732-1|AAH67732.1| 215|Homo sapiens high-mobility group box... 54 6e-07
BC066889-1|AAH66889.1| 215|Homo sapiens high-mobility group box... 54 6e-07
BC030981-1|AAH30981.1| 215|Homo sapiens high-mobility group box... 54 6e-07
BC003378-1|AAH03378.1| 215|Homo sapiens high-mobility group box... 54 6e-07
AY377859-1|AAQ91389.1| 215|Homo sapiens high mobility group pro... 54 6e-07
AL353648-4|CAI15606.1| 97|Homo sapiens high-mobility group box... 54 6e-07
AL353648-3|CAI15603.1| 158|Homo sapiens high-mobility group box... 54 6e-07
AL353648-2|CAI15601.1| 162|Homo sapiens high-mobility group box... 54 6e-07
AL353648-1|CAI15600.1| 215|Homo sapiens high-mobility group box... 54 6e-07
AB208998-1|BAD92235.1| 176|Homo sapiens high-mobility group box... 54 6e-07
L08048-1|AAA64970.1| 216|Homo sapiens HMG-1 protein. 52 3e-06
D63874-1|BAA09924.1| 215|Homo sapiens HMG-1 protein. 51 6e-06
AF281043-1|AAK64599.1| 50|Homo sapiens high mobility group 1 p... 50 1e-05
AF255609-1|AAF71287.1| 50|Homo sapiens high mobility group pro... 50 1e-05
AC007277-1|AAF19244.1| 191|Homo sapiens WUGSC:H_NH0244E06.1 pro... 47 7e-05
Z95115-3|CAB62951.1| 211|Homo sapiens high-mobility group (nonh... 46 2e-04
Z17240-1|CAA78938.1| 186|Homo sapiens HMG2B protein. 46 2e-04
L79988-1|AAL77438.1| 403|Homo sapiens nuclear autoantigen protein. 40 0.015
AF056322-1|AAC39790.1| 879|Homo sapiens SP100-HMG nuclear autoa... 40 0.015
AC010149-1|AAY14879.1| 843|Homo sapiens unknown protein. 40 0.015
AF076675-2|AAF39781.1| 181|Homo sapiens SP100-HMG protein. 39 0.019
BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein. 33 1.3
BC041155-1|AAH41155.1| 311|Homo sapiens SRRM2 protein protein. 33 1.3
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 33 1.3
AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein pro... 33 1.3
AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein pro... 33 1.3
AB015644-1|BAA34957.1| 229|Homo sapiens RNA binding protein pro... 33 1.3
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 33 1.3
DQ207367-1|ABB22048.1| 186|Homo sapiens HMG2-like protein protein. 33 1.7
BC021180-1|AAH21180.1| 186|Homo sapiens high-mobility group box... 33 1.7
X56687-1|CAA40016.1| 727|Homo sapiens autoantigen NOR-90 protein. 31 5.1
X53461-1|CAA37548.1| 764|Homo sapiens protein ( Human mRNA for ... 31 5.1
X53390-1|CAA37469.1| 764|Homo sapiens protein ( Human mRNA for ... 31 5.1
U65487-1|AAC51239.1| 654|Homo sapiens ribosomal RNA upstream bi... 31 5.1
BC042297-1|AAH42297.1| 727|Homo sapiens upstream binding transc... 31 5.1
>X62534-1|CAA44395.1| 209|Homo sapiens HMG-2 protein.
Length = 209
Score = 62.9 bits (146), Expect = 1e-09
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = +3
Query: 615 NKPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*T 791
NKPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K+ +
Sbjct: 7 NKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKS 66
Query: 792 GQASFDLEMQNYV 830
+A +D EM+NYV
Sbjct: 67 DKARYDREMKNYV 79
>M83665-1|AAA58659.1| 209|Homo sapiens high mobility group 2
protein protein.
Length = 209
Score = 62.9 bits (146), Expect = 1e-09
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = +3
Query: 615 NKPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*T 791
NKPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K+ +
Sbjct: 7 NKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKS 66
Query: 792 GQASFDLEMQNYV 830
+A +D EM+NYV
Sbjct: 67 DKARYDREMKNYV 79
>BT019783-1|AAV38586.1| 208|Homo sapiens high-mobility group box 2
protein.
Length = 208
Score = 62.9 bits (146), Expect = 1e-09
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = +3
Query: 615 NKPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*T 791
NKPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K+ +
Sbjct: 7 NKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKS 66
Query: 792 GQASFDLEMQNYV 830
+A +D EM+NYV
Sbjct: 67 DKARYDREMKNYV 79
>BT019782-1|AAV38585.1| 209|Homo sapiens high-mobility group box 2
protein.
Length = 209
Score = 62.9 bits (146), Expect = 1e-09
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = +3
Query: 615 NKPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*T 791
NKPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K+ +
Sbjct: 7 NKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKS 66
Query: 792 GQASFDLEMQNYV 830
+A +D EM+NYV
Sbjct: 67 DKARYDREMKNYV 79
>BC100019-1|AAI00020.1| 209|Homo sapiens HMGB2 protein protein.
Length = 209
Score = 62.9 bits (146), Expect = 1e-09
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = +3
Query: 615 NKPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*T 791
NKPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K+ +
Sbjct: 7 NKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKS 66
Query: 792 GQASFDLEMQNYV 830
+A +D EM+NYV
Sbjct: 67 DKARYDREMKNYV 79
>BC001063-1|AAH01063.1| 209|Homo sapiens high-mobility group box 2
protein.
Length = 209
Score = 62.9 bits (146), Expect = 1e-09
Identities = 33/73 (45%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = +3
Query: 615 NKPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*T 791
NKPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K+ +
Sbjct: 7 NKPRGKMSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKS 66
Query: 792 GQASFDLEMQNYV 830
+A +D EM+NYV
Sbjct: 67 DKARYDREMKNYV 79
>BX537505-1|CAD97768.1| 127|Homo sapiens hypothetical protein
protein.
Length = 127
Score = 62.5 bits (145), Expect = 2e-09
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +3
Query: 582 NKARMPRSRPYNKPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGK 758
N RM + P KP+G+M+AYAFFVQTCREEH KKN + V + + S+K + GK
Sbjct: 27 NTVRMAKGDP-KKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGK 85
Query: 759 RKTAVP*DG*TGQASFDLEMQNY 827
K+ + +D EM++Y
Sbjct: 86 EKSKFDEMAKADKVRYDREMKDY 108
>L05085-1|AAC15850.1| 109|Homo sapiens non-histone chromosomal
protein protein.
Length = 109
Score = 58.4 bits (135), Expect = 3e-08
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEHKK-NTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KP+G+M+AYAFFVQTCREEHKK N + V + + S+K + GK K+
Sbjct: 8 KPKGKMSAYAFFVQTCREEHKKXNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKAD 67
Query: 795 QASFDLEMQNY 827
+ +D EM++Y
Sbjct: 68 KVRYDREMKDY 78
>BC070482-1|AAH70482.1| 200|Homo sapiens HMGB3 protein protein.
Length = 200
Score = 58.4 bits (135), Expect = 3e-08
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KP+G+M+AYAFFVQTCREEH KKN + V + + S+K + GK K+
Sbjct: 8 KPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKAD 67
Query: 795 QASFDLEMQNY 827
+ +D EM++Y
Sbjct: 68 KVRYDREMKDY 78
>Y10043-1|CAA71143.1| 200|Homo sapiens high mobility group protein
2a protein.
Length = 200
Score = 55.6 bits (128), Expect = 2e-07
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KP+G+ +AYAFFVQTCREEH KKN + V + + S+K + GK K+
Sbjct: 8 KPKGKTSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTVSGKEKSKFDEMAKAD 67
Query: 795 QASFDLEMQNY 827
+ +D EM++Y
Sbjct: 68 KVRYDREMKDY 78
>X12597-1|CAA31110.1| 215|Homo sapiens protein ( Human mRNA for
high mobility group-1 protein (HMG-1). ).
Length = 215
Score = 54.0 bits (124), Expect = 6e-07
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 795 QASFDLEMQNYV 830
+A ++ EM+ Y+
Sbjct: 68 KARYEREMKTYI 79
>U51677-1|AAB08987.1| 215|Homo sapiens non-histone chromatin
protein HMG1 protein.
Length = 215
Score = 54.0 bits (124), Expect = 6e-07
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 795 QASFDLEMQNYV 830
+A ++ EM+ Y+
Sbjct: 68 KARYEREMKTYI 79
>EU012027-1|ABS29271.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 54.0 bits (124), Expect = 6e-07
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 795 QASFDLEMQNYV 830
+A ++ EM+ Y+
Sbjct: 68 KARYEREMKTYI 79
>EF157968-1|ABM47301.1| 215|Homo sapiens high mobility group box 1
protein protein.
Length = 215
Score = 54.0 bits (124), Expect = 6e-07
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 795 QASFDLEMQNYV 830
+A ++ EM+ Y+
Sbjct: 68 KARYEREMKTYI 79
>CR456863-1|CAG33144.1| 215|Homo sapiens HMGB1 protein.
Length = 215
Score = 54.0 bits (124), Expect = 6e-07
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 795 QASFDLEMQNYV 830
+A ++ EM+ Y+
Sbjct: 68 KARYEREMKTYI 79
>BT020159-1|AAV38961.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 54.0 bits (124), Expect = 6e-07
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 795 QASFDLEMQNYV 830
+A ++ EM+ Y+
Sbjct: 68 KARYEREMKTYI 79
>BT006940-1|AAP35586.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 54.0 bits (124), Expect = 6e-07
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 795 QASFDLEMQNYV 830
+A ++ EM+ Y+
Sbjct: 68 KARYEREMKTYI 79
>BC141844-1|AAI41845.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 54.0 bits (124), Expect = 6e-07
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 795 QASFDLEMQNYV 830
+A ++ EM+ Y+
Sbjct: 68 KARYEREMKTYI 79
>BC067732-1|AAH67732.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 54.0 bits (124), Expect = 6e-07
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 795 QASFDLEMQNYV 830
+A ++ EM+ Y+
Sbjct: 68 KARYEREMKTYI 79
>BC066889-1|AAH66889.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 54.0 bits (124), Expect = 6e-07
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 795 QASFDLEMQNYV 830
+A ++ EM+ Y+
Sbjct: 68 KARYEREMKTYI 79
>BC030981-1|AAH30981.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 54.0 bits (124), Expect = 6e-07
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 795 QASFDLEMQNYV 830
+A ++ EM+ Y+
Sbjct: 68 KARYEREMKTYI 79
>BC003378-1|AAH03378.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 54.0 bits (124), Expect = 6e-07
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 795 QASFDLEMQNYV 830
+A ++ EM+ Y+
Sbjct: 68 KARYEREMKTYI 79
>AY377859-1|AAQ91389.1| 215|Homo sapiens high mobility group
protein 1 protein.
Length = 215
Score = 54.0 bits (124), Expect = 6e-07
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 795 QASFDLEMQNYV 830
+A ++ EM+ Y+
Sbjct: 68 KARYEREMKTYI 79
>AL353648-4|CAI15606.1| 97|Homo sapiens high-mobility group box 1
protein.
Length = 97
Score = 54.0 bits (124), Expect = 6e-07
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 795 QASFDLEMQNYV 830
+A ++ EM+ Y+
Sbjct: 68 KARYEREMKTYI 79
>AL353648-3|CAI15603.1| 158|Homo sapiens high-mobility group box 1
protein.
Length = 158
Score = 54.0 bits (124), Expect = 6e-07
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 795 QASFDLEMQNYV 830
+A ++ EM+ Y+
Sbjct: 68 KARYEREMKTYI 79
>AL353648-2|CAI15601.1| 162|Homo sapiens high-mobility group box 1
protein.
Length = 162
Score = 54.0 bits (124), Expect = 6e-07
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 795 QASFDLEMQNYV 830
+A ++ EM+ Y+
Sbjct: 68 KARYEREMKTYI 79
>AL353648-1|CAI15600.1| 215|Homo sapiens high-mobility group box 1
protein.
Length = 215
Score = 54.0 bits (124), Expect = 6e-07
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 795 QASFDLEMQNYV 830
+A ++ EM+ Y+
Sbjct: 68 KARYEREMKTYI 79
>AB208998-1|BAD92235.1| 176|Homo sapiens high-mobility group box 1
variant protein.
Length = 176
Score = 54.0 bits (124), Expect = 6e-07
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KPRG+M++YAFFVQTCREEH KK+ SV + + S+K + K K
Sbjct: 10 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 69
Query: 795 QASFDLEMQNYV 830
+A ++ EM+ Y+
Sbjct: 70 KARYEREMKTYI 81
>L08048-1|AAA64970.1| 216|Homo sapiens HMG-1 protein.
Length = 216
Score = 51.6 bits (118), Expect = 3e-06
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KP G+M++YAFFVQTCREEH KK+ SV + + S+K + K K
Sbjct: 8 KPTGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 795 QASFDLEMQNYV 830
+A ++ EM+ Y+
Sbjct: 68 KARYEREMKTYI 79
>D63874-1|BAA09924.1| 215|Homo sapiens HMG-1 protein.
Length = 215
Score = 50.8 bits (116), Expect = 6e-06
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KPR +M++YAFFVQTCREEH KK+ SV + + S+K + K K
Sbjct: 8 KPRRKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 795 QASFDLEMQNYV 830
+A ++ EM+ Y+
Sbjct: 68 KARYEREMKTYI 79
>AF281043-1|AAK64599.1| 50|Homo sapiens high mobility group 1
protein protein.
Length = 50
Score = 49.6 bits (113), Expect = 1e-05
Identities = 23/37 (62%), Positives = 30/37 (81%), Gaps = 1/37 (2%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRK 725
KPRG+M++YAFFVQTCREEH KK+ SV + + S+K
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKK 44
>AF255609-1|AAF71287.1| 50|Homo sapiens high mobility group
protein HMG1 protein.
Length = 50
Score = 49.6 bits (113), Expect = 1e-05
Identities = 23/37 (62%), Positives = 30/37 (81%), Gaps = 1/37 (2%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRK 725
KPRG+M++YAFFVQTCREEH KK+ SV + + S+K
Sbjct: 8 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKK 44
>AC007277-1|AAF19244.1| 191|Homo sapiens WUGSC:H_NH0244E06.1
protein.
Length = 191
Score = 47.2 bits (107), Expect = 7e-05
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREE-HKKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
KPRG+M++YAFFVQTCREE KK+ SV + + S+K + K K
Sbjct: 8 KPRGKMSSYAFFVQTCREECKKKHPDASVNFSEFSKKCSERWKAMSAKDKGKFEDMAKVD 67
Query: 795 QASFDLEMQNYV 830
+ ++ EM+ Y+
Sbjct: 68 KDRYEREMKTYI 79
>Z95115-3|CAB62951.1| 211|Homo sapiens high-mobility group
(nonhistone chromosomal) protein 1-like 10 protein.
Length = 211
Score = 45.6 bits (103), Expect = 2e-04
Identities = 21/48 (43%), Positives = 29/48 (60%)
Frame = +1
Query: 655 CRRAEKNTRRIP*CQCYICSILEKCAERWNTMSEKEKQRFHEMAEQDK 798
CR A K ++ P + +KC+ERW TMS KEK +F +MA+ DK
Sbjct: 23 CREAHK--KKHPDASVNLSEFSKKCSERWKTMSAKEKGKFEDMAKADK 68
Score = 41.1 bits (92), Expect = 0.005
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 618 KPRGRMTAYAFFVQTCREEH-KKNTLMSVLYLQHSRKVRREVEYNVGKRKTAVP*DG*TG 794
K RG+M+++AFF QTCRE H KK+ SV + S+K + K K
Sbjct: 8 KLRGKMSSHAFFGQTCREAHKKKHPDASVNLSEFSKKCSERWKTMSAKEKGKFEDMAKAD 67
Query: 795 QASFDLEMQNYV 830
+A ++ EM+ Y+
Sbjct: 68 KAHYEREMKTYI 79
>Z17240-1|CAA78938.1| 186|Homo sapiens HMG2B protein.
Length = 186
Score = 45.6 bits (103), Expect = 2e-04
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = +1
Query: 667 EKNTRRIP*CQCYICSILEKCAERWNTMSEKEKQRFHEMAEQDKHR 804
E++ ++ P +KC+ERW TMS KEK +F +MA+ DK R
Sbjct: 2 EEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMAKSDKAR 47
>L79988-1|AAL77438.1| 403|Homo sapiens nuclear autoantigen protein.
Length = 403
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +1
Query: 646 HSLCRRAEKNTRRIP*CQCYICSILEKCAERWNTMSEKEKQRFHEMAEQDK 798
++L E++ ++ P L+KC+E W T+ KEK +F +MA+ DK
Sbjct: 216 NTLVDPCEEHKKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADK 266
>AF056322-1|AAC39790.1| 879|Homo sapiens SP100-HMG nuclear
autoantigen protein.
Length = 879
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +1
Query: 646 HSLCRRAEKNTRRIP*CQCYICSILEKCAERWNTMSEKEKQRFHEMAEQDK 798
++L E++ ++ P L+KC+E W T+ KEK +F +MA+ DK
Sbjct: 692 NTLVDPCEEHKKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADK 742
>AC010149-1|AAY14879.1| 843|Homo sapiens unknown protein.
Length = 843
Score = 39.5 bits (88), Expect = 0.015
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +1
Query: 646 HSLCRRAEKNTRRIP*CQCYICSILEKCAERWNTMSEKEKQRFHEMAEQDK 798
++L E++ ++ P L+KC+E W T+ KEK +F +MA+ DK
Sbjct: 656 NTLVDPCEEHKKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADK 706
>AF076675-2|AAF39781.1| 181|Homo sapiens SP100-HMG protein.
Length = 181
Score = 39.1 bits (87), Expect = 0.019
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +1
Query: 667 EKNTRRIP*CQCYICSILEKCAERWNTMSEKEKQRFHEMAEQDK 798
E++ ++ P L+KC+E W T+ KEK +F +MA+ DK
Sbjct: 1 EEHKKKNPDASVKFSEFLKKCSETWKTIFAKEKGKFEDMAKADK 44
>BC070050-1|AAH70050.1| 1022|Homo sapiens SRRM2 protein protein.
Length = 1022
Score = 33.1 bits (72), Expect = 1.3
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +2
Query: 53 KSRKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESPAS 211
K RKRS+ +T S R +S D +++ ++S + S A K+ TTA+A + SPAS
Sbjct: 243 KKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 300
>BC041155-1|AAH41155.1| 311|Homo sapiens SRRM2 protein protein.
Length = 311
Score = 33.1 bits (72), Expect = 1.3
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +2
Query: 53 KSRKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESPAS 211
K RKRS+ +T S R +S D +++ ++S + S A K+ TTA+A + SPAS
Sbjct: 147 KKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 204
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein
protein.
Length = 2752
Score = 33.1 bits (72), Expect = 1.3
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +2
Query: 53 KSRKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESPAS 211
K RKRS+ +T S R +S D +++ ++S + S A K+ TTA+A + SPAS
Sbjct: 243 KKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 300
>AB016088-1|BAA83714.1| 956|Homo sapiens RNA binding protein
protein.
Length = 956
Score = 33.1 bits (72), Expect = 1.3
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +2
Query: 53 KSRKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESPAS 211
K RKRS+ +T S R +S D +++ ++S + S A K+ TTA+A + SPAS
Sbjct: 208 KKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 265
>AB016087-1|BAA83713.1| 1262|Homo sapiens RNA binding protein
protein.
Length = 1262
Score = 33.1 bits (72), Expect = 1.3
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +2
Query: 53 KSRKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESPAS 211
K RKRS+ +T S R +S D +++ ++S + S A K+ TTA+A + SPAS
Sbjct: 33 KKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 90
>AB015644-1|BAA34957.1| 229|Homo sapiens RNA binding protein
protein.
Length = 229
Score = 33.1 bits (72), Expect = 1.3
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +2
Query: 53 KSRKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESPAS 211
K RKRS+ +T S R +S D +++ ++S + S A K+ TTA+A + SPAS
Sbjct: 47 KKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 104
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 33.1 bits (72), Expect = 1.3
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +2
Query: 53 KSRKRSKQST----SERYSTESSVDPTTTAAGAKS-NYSTATKSITTAVAATTESPAS 211
K RKRS+ +T S R +S D +++ ++S + S A K+ TTA+A + SPAS
Sbjct: 291 KKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 348
>DQ207367-1|ABB22048.1| 186|Homo sapiens HMG2-like protein protein.
Length = 186
Score = 32.7 bits (71), Expect = 1.7
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 724 KCAERWNTMSEKEKQRFHEMAEQDKHR 804
KC+E+W ++S+ EK ++ +A+ DK R
Sbjct: 44 KCSEKWRSISKHEKAKYEALAKLDKAR 70
>BC021180-1|AAH21180.1| 186|Homo sapiens high-mobility group box 4
protein.
Length = 186
Score = 32.7 bits (71), Expect = 1.7
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 724 KCAERWNTMSEKEKQRFHEMAEQDKHR 804
KC+E+W ++S+ EK ++ +A+ DK R
Sbjct: 44 KCSEKWRSISKHEKAKYEALAKLDKAR 70
>X56687-1|CAA40016.1| 727|Homo sapiens autoantigen NOR-90 protein.
Length = 727
Score = 31.1 bits (67), Expect = 5.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 727 CAERWNTMSEKEKQRFHEMAEQDK 798
C+++W +S+KEK +H+ +Q K
Sbjct: 291 CSQQWKLLSQKEKDAYHKKCDQKK 314
>X53461-1|CAA37548.1| 764|Homo sapiens protein ( Human mRNA for
upstream binding factor (hUBF). ).
Length = 764
Score = 31.1 bits (67), Expect = 5.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 727 CAERWNTMSEKEKQRFHEMAEQDK 798
C+++W +S+KEK +H+ +Q K
Sbjct: 328 CSQQWKLLSQKEKDAYHKKCDQKK 351
>X53390-1|CAA37469.1| 764|Homo sapiens protein ( Human mRNA for
upstream binding factor (hUBF). ).
Length = 764
Score = 31.1 bits (67), Expect = 5.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 727 CAERWNTMSEKEKQRFHEMAEQDK 798
C+++W +S+KEK +H+ +Q K
Sbjct: 328 CSQQWKLLSQKEKDAYHKKCDQKK 351
>U65487-1|AAC51239.1| 654|Homo sapiens ribosomal RNA upstream
binding transcription factor protein.
Length = 654
Score = 31.1 bits (67), Expect = 5.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 727 CAERWNTMSEKEKQRFHEMAEQDK 798
C+++W +S+KEK +H+ +Q K
Sbjct: 170 CSQQWKLLSQKEKDAYHKKCDQKK 193
>BC042297-1|AAH42297.1| 727|Homo sapiens upstream binding
transcription factor, RNA polymerase I protein.
Length = 727
Score = 31.1 bits (67), Expect = 5.1
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 727 CAERWNTMSEKEKQRFHEMAEQDK 798
C+++W +S+KEK +H+ +Q K
Sbjct: 291 CSQQWKLLSQKEKDAYHKKCDQKK 314
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,559,790
Number of Sequences: 237096
Number of extensions: 1264899
Number of successful extensions: 4449
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 4092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4387
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10426655866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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