Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0796
         (831 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06180.1 68416.m00710 expressed protein                             31   0.94 
At2g25260.1 68415.m03022 expressed protein                             30   1.6  
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ...    30   2.2  
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro...    30   2.2  
At2g12875.1 68415.m01402 hypothetical protein                          30   2.2  
At5g16590.1 68418.m01942 leucine-rich repeat transmembrane prote...    29   5.0  
At3g48710.1 68416.m05319 expressed protein putative protein - Ar...    29   5.0  
At3g09000.1 68416.m01053 proline-rich family protein                   29   5.0  
At2g33320.1 68415.m04084 C2 domain-containing protein low simila...    28   6.6  
At1g73805.1 68414.m08545 calmodulin-binding protein similar to c...    28   6.6  
At5g53950.1 68418.m06712 no apical meristem (NAM) family protein...    28   8.7  
At1g28400.1 68414.m03492 expressed protein similar to E6 (GI:100...    28   8.7  

>At3g06180.1 68416.m00710 expressed protein 
          Length = 241

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 12/44 (27%), Positives = 31/44 (70%)
 Frame = +2

Query: 80  TSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 211
           + E +ST +S+ P+++A+ + SN+S+++ S ++++     SP++
Sbjct: 8   SDEEHSTTNSMPPSSSASRSASNHSSSSSSSSSSLHLCKHSPSA 51


>At2g25260.1 68415.m03022 expressed protein 
          Length = 358

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 745 TMSEKEKQRFHE-MAEQDKHRSTWRCRTMY 831
           T S+K K+ FH  +   D   STW+CR MY
Sbjct: 55  TPSKKTKRLFHTAVTATDSVYSTWQCRVMY 84


>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam
            PF00400: WD domain, G-beta repeats;
          Length = 1327

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/71 (26%), Positives = 28/71 (39%)
 Frame = +2

Query: 20   VLRILVVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTE 199
            V + L + E  K        +SE   TES+ +    A       +   +S     AA  E
Sbjct: 1154 VAKPLALEEPTKPLAIEAPPSSEAPQTESAPETAAAAESPAPETAAVAESPAPGTAAVAE 1213

Query: 200  SPASFATAEPI 232
            +PAS   A P+
Sbjct: 1214 APASETAAAPV 1224


>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
           protein similar to HMG protein [Arabidopsis thaliana]
           GI:2832361; contains Pfam profile PF00505: HMG (high
           mobility group) box
          Length = 151

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 727 CAERWNTMSEKEKQRFHEMAEQDKHRSTWRCRTMY 831
           C E+W TM+ +EK +++++A  +K     R  T Y
Sbjct: 98  CGEKWKTMTYEEKVKYYDIA-TEKREEFHRAMTEY 131


>At2g12875.1 68415.m01402 hypothetical protein
          Length = 325

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +2

Query: 44  ESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 211
           E  +  +  K+  + + S    + P     G K     ATK I     ATTE P+S
Sbjct: 45  EEEEKEEEKKKGMTTKESPPMIIMPVKKKTGLKRKRGVATKLIDKGTKATTEEPSS 100


>At5g16590.1 68418.m01942 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 625

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +2

Query: 5   IVCSFVLRILVVAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAK-SNYSTATKSITTA 181
           I C  +L +L +      RK+ K+   +  S E++  PT++AA AK SN   A  +   +
Sbjct: 252 IGCFVLLLVLFLIVFCLCRKKKKEQVVQSRSIEAAPVPTSSAAVAKESNGPPAVVANGAS 311

Query: 182 VAATTESPAS 211
               +++PA+
Sbjct: 312 ENGVSKNPAA 321


>At3g48710.1 68416.m05319 expressed protein putative protein -
           Arabidopsis thaliana, EMBL:AL078465.1
          Length = 462

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 5   IVCSFVLRILVVAESVKSRKRSKQSTSERY-STESSVDPTTTAAGAK 142
           +VC    R +++A+S K  K+ K+STS+   S ESS  P      AK
Sbjct: 196 LVCPKATRDILLADSEKETKKRKKSTSKNVTSGESSHVPAKRRRQAK 242


>At3g09000.1 68416.m01053 proline-rich family protein
          Length = 541

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +2

Query: 41  AESVKSRKRSKQSTSERYSTE---SSVDPTTTAAGAKSNYSTATKSITTAVAATTESPAS 211
           + S  SR  S+ +T  R ST    S+  P TT A    + +  +++  TA  ATT + A 
Sbjct: 148 SSSGSSRSTSRPATPTRRSTTPTTSTSRPVTTRASNSRSSTPTSRATLTAARATTSTAAP 207

Query: 212 FAT 220
             T
Sbjct: 208 RTT 210


>At2g33320.1 68415.m04084 C2 domain-containing protein low
           similarity to splicing coactivator subunit SRm300 [Homo
           sapiens] GI:6649242; contains Pfam profile PF00168: C2
           domain
          Length = 602

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 53  KSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAV 184
           +SR  +++  S   S ES   PTTT   + ++ S  TKSI  A+
Sbjct: 233 RSRVANRKPASALMSAESETVPTTTGHDSVTSDSELTKSIEYAL 276


>At1g73805.1 68414.m08545 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 244

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 681 KNTLMSVLYLQHSRKVRREVEYNVGKR 761
           +NTL SVL     + VR+EVEY + KR
Sbjct: 43  ENTLRSVLEPVIRKVVRQEVEYGISKR 69


>At5g53950.1 68418.m06712 no apical meristem (NAM) family protein
           identical to no apical meristem protein CUC2
           (GI:1944132) [Arabidopsis thaliana]; contains Pfam
           PF02365: No apical meristem (NAM) domain;
          Length = 375

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +2

Query: 38  VAESVKSRKRSKQSTSERYSTESSVDPTTTAAGAKSNYSTATKSITTAVAAT--TESPAS 211
           V  ++    + + S+    S    +DPTTT     S+ S  ++S  T V A+  TE  + 
Sbjct: 203 VPSTISRNYQEQPSSPSSVSLPPLLDPTTTLGYTDSSCSYDSRSTNTTVTASAITEHVSC 262

Query: 212 FAT 220
           F+T
Sbjct: 263 FST 265


>At1g28400.1 68414.m03492 expressed protein similar to E6
           (GI:1000090) [Gossypium barbadense]
          Length = 335

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 415 YSTKLLN--QYSSNNKLYKNTFKL-FSNNRYRQHY 510
           Y TK  N  ++++NN  Y   FK  F+NN+Y ++Y
Sbjct: 142 YGTKGYNNEEFNNNNNKYDANFKEEFNNNKYDENY 176


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,601,706
Number of Sequences: 28952
Number of extensions: 186062
Number of successful extensions: 782
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)