Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0795
(861 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 104 1e-23
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch... 31 0.28
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 28 1.5
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 28 1.5
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 28 1.5
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 28 2.0
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 27 3.4
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 27 4.5
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 6.0
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe... 26 7.9
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc... 26 7.9
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 104 bits (250), Expect = 1e-23
Identities = 59/180 (32%), Positives = 99/180 (55%), Gaps = 1/180 (0%)
Frame = +2
Query: 251 DLETYAASYTGFAKLYRLMFVADHCPSLRLEALKMAISYVMT-TYNVNLYHTLHKKLSEA 427
+L+ Y Y ++K++R +FVA + LR + AI + TYN+ LY +L ++ +
Sbjct: 11 ELKRYLDEYGVWSKIFRALFVARNSKPLRSFCVHYAIKELKEKTYNLELYQSLFEEFQDC 70
Query: 428 VASAGLPDIAGSQDIPVLDTIWVESKTKKAAIKLEKLDTDLKNYKTNSIKESIRRGHDDL 607
+ L D WVES T LE+L +LK YK N I+ESIR DL
Sbjct: 71 FENEQL------------DVEWVESVTFHRKQNLEQLRRELKAYKNNLIRESIRAAQLDL 118
Query: 608 GDHYLDCGDLTSALKCYSRARDYCTSGKHLVMMCLNVVKVSVYLQNWAHVLNYVSKAEAT 787
+ D G SAL+ Y++ R+YCT+ + + L ++++S+++ N++HVL + S+A++T
Sbjct: 119 ASFFADVGQFDSALRSYAKVREYCTNAGQIAHLSLELMRISIWIGNYSHVLAFGSRAKST 178
>SPBC2G5.04c |||COPII-coated vesicle component Erv41
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 333
Score = 30.7 bits (66), Expect = 0.28
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Frame = -2
Query: 296 KVLQNQYMTQRMFPNPRWGFQRRSIPSHCF---HYL----LGEYQPALV 171
+++ N+ Q P WG+ R +IP H HY+ GEY PALV
Sbjct: 157 QLVVNRVNGQLHITAPGWGYGRSNIPFHSLNFTHYIEELSFGEYYPALV 205
>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 737
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -3
Query: 415 FFMQCVIQIYVICGHDIGYGHFQSFQSQ*RTVVCYKHEPIKFCKTSI 275
F +CV++ Y + G F+SF + ++HE I+FCK ++
Sbjct: 140 FLRKCVVE-YEQFSFEQGVQFFKSFLQYRAPSMDFQHEGIEFCKINV 185
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +2
Query: 137 NPPIMFEMNTAEPMQVDIPPEDNENNET---ECYVVENPTLDLETYAASYTGFAKLYRLM 307
+PP E+ + PP D E NET E ++E P+ D + T A ++
Sbjct: 14 DPPSYEEVALHSALNNSAPPNDGEQNETSMEEMEIIEPPSEDSSRFPLLRTKLAAIHEGW 73
Query: 308 FVADHCPSLR 337
A H +R
Sbjct: 74 ESACHSFEIR 83
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 28.3 bits (60), Expect = 1.5
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 12/102 (11%)
Frame = +2
Query: 137 NPPIMFEMNTAEPM---QVDIPPEDNENNET-ECYVVENPTLDLETYA--ASYTGFAKLY 298
+PP MF ++ P+ + P EN ET EC + +P + A G +
Sbjct: 395 SPPTMFRDHSFAPLVSPSIVSPYGVLENEETGECAFLFSPNASQPHFQPRAPTFGIPRNV 454
Query: 299 RLMFVADHCPSLR-LEA-----LKMAISYVMTTYNVNLYHTL 406
R +F ++R +E +++A+ V+TTYNV+L T+
Sbjct: 455 RSLFTLPFFHTIRNIERHFRLFIRLALFCVLTTYNVSLSQTI 496
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 533 KLDTDLKNYKTNSIKESIRRGHDDLGDHYLD 625
K+D+D K +K ++++ IR H D+G D
Sbjct: 122 KVDSDEKKHKHKNVRDYIRFKHVDIGGRIFD 152
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 27.1 bits (57), Expect = 3.4
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 440 GLPDIAGSQDIPVLDTIWVESKTKKAAIKLEKLDTDLKNYKTNSIKESIRRGHDD 604
G P + D V D ++ K K +K ++ T LKN K ES+ GH+D
Sbjct: 619 GHPFVLQLSDNEVTDASFISEKLK---LKYQQFTT-LKNLKNIDSLESLELGHED 669
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 255 WKHTLRHILVLQNFIGSCL 311
WK TL +LVLQ I CL
Sbjct: 124 WKETLSSLLVLQGNISQCL 142
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 44 NTKRVVKLRFSDELVFIVDSKFRVFSLKK 130
N KR+V+ DEL +VD K F+ KK
Sbjct: 70 NGKRIVQKAVFDELCSLVDPKVDAFTPKK 98
>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 117 NTRNLLSTMKTNSSENRNFTTLLVFFNKYLYHYVSSWQ 4
++RN LS M+ NF T +V +K HY+ + Q
Sbjct: 127 SSRNRLSNMELEVLRALNFDTHIVIPHKLAIHYLQTLQ 164
>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 326 DSGLLQT*AYKVLQNQYMTQRMFPNPRWGFQRRSIPSHCFHYLLGEY 186
D LL+T + L +Q +FP P++ R S S + YL+ +
Sbjct: 118 DISLLKTELNEALCSQIRVWSVFPAPKYFNPRISCESRTYEYLIPSF 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,460,606
Number of Sequences: 5004
Number of extensions: 71675
Number of successful extensions: 212
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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