Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0794
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac...    28   1.4  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   7.5  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   7.5  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    25   10.0 

>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = +3

Query: 543 TASRTTNSYPFFYLNDYGQDVKLLSINICMYVCKFAD*LDFLKITLKTFVRYIATR*PDS 722
           T +R TNS    +L  YG +  +L  N+        D   F  +TL  F   +ATR  DS
Sbjct: 147 TTARRTNSSTIGFLASYGDNTTVLGYNM-------VDNAYFAGLTLPGFEFGLATREYDS 199

Query: 723 NNIS 734
           + IS
Sbjct: 200 SQIS 203


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 103  GKKSTLKPTGSSIKTPQLNFCRKIGGL 183
            GK+ T+         P LN C KIGGL
Sbjct: 1143 GKRRTVLLATLEYDIPSLNICIKIGGL 1169


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +3

Query: 624 ICMYVCKFAD*LDFLKITLKTFVRYIATR*P 716
           +C++ CKFA+   FL ++++  +  ++T  P
Sbjct: 691 VCVFTCKFAESYFFLTLSIRDPIIVLSTMRP 721


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 660 PINLQICTRTYKYLSTIT*HPDHNH 586
           P   ++C++ YK L+ +  H  H+H
Sbjct: 398 PYRCEVCSKRYKNLNGLKYHRTHSH 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,076,756
Number of Sequences: 5004
Number of extensions: 57431
Number of successful extensions: 97
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)