Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0794
         (831 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0620 - 5416197-5416225,5416333-5416652,5417144-5417235,541...    28   7.9  
06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,344...    28   7.9  

>08_01_0620 -
           5416197-5416225,5416333-5416652,5417144-5417235,
           5417304-5417394,5417489-5417577,5417812-5417929,
           5418007-5418098,5418180-5418215,5418323-5418403,
           5418510-5418617,5418809-5418901,5419045-5419146,
           5419345-5419449,5419526-5419612,5419952-5420227
          Length = 572

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +1

Query: 235 KEMELCDNDYRGYNTLTLQYKTKLGDSVTGGQRR 336
           K +EL  +D  GYN    + K K GDS  GG RR
Sbjct: 471 KALELSGSDLGGYNLYVDEAKPK-GDSRDGGGRR 503


>06_01_0485 -
           3444240-3444398,3444507-3444572,3444644-3444724,
           3444823-3444900,3444980-3445075,3445363-3445405,
           3445498-3445571,3445693-3445781,3445887-3445935,
           3446171-3446227,3446309-3446425,3448633-3448698,
           3449140-3449196,3449271-3449363,3449515-3449662,
           3449753-3449902,3449979-3450181,3450319-3450438,
           3450530-3450694,3450784-3450870,3450951-3451100,
           3451225-3451365,3451399-3451569,3452015-3452091,
           3452175-3452415,3452495-3452758,3452913-3453000,
           3453099-3453481
          Length = 1170

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 253 DNDYRGYNTLTLQYKTKLGDSVTGGQRRPIIALGKAIHR 369
           D DY G+ TL   Y  KLG  V    +  ++ +   IH+
Sbjct: 173 DYDYFGFKTLERSYLLKLGGKVVERPQHMLMRVSVGIHK 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,606,642
Number of Sequences: 37544
Number of extensions: 324793
Number of successful extensions: 449
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)