Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0790
(642 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19900.1 68414.m02495 glyoxal oxidase-related contains simila... 32 0.28
At1g75620.1 68414.m08786 glyoxal oxidase-related contains simila... 32 0.37
At4g19830.1 68417.m02907 immunophilin / FKBP-type peptidyl-proly... 30 1.5
At3g09000.1 68416.m01053 proline-rich family protein 30 1.5
At4g11860.1 68417.m01887 expressed protein contains Pfam domain ... 29 2.6
At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative 29 2.6
At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containi... 28 4.6
At3g58600.1 68416.m06531 expressed protein hypothetical protein ... 28 4.6
At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase fa... 28 6.1
At3g54320.1 68416.m06003 ovule development protein, putative sim... 28 6.1
At5g19340.1 68418.m02305 expressed protein 27 8.0
At1g63910.1 68414.m07236 myb family transcription factor (MYB103... 27 8.0
>At1g19900.1 68414.m02495 glyoxal oxidase-related contains
similarity to glyoxal oxidase precursor [Phanerochaete
chrysosporium] gi|1050302|gb|AAA87594
Length = 548
Score = 32.3 bits (70), Expect = 0.28
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 508 TPRPETLPMNQGC--GWRNPDGVAFRTTGDVDGETKFGEF 621
T RP T+ N C G PDGV +T GD DGE K F
Sbjct: 101 TIRPLTVQSNTWCSSGSVRPDGVLVQTGGDRDGELKTRTF 140
>At1g75620.1 68414.m08786 glyoxal oxidase-related contains
similarity to glyoxal oxidase precursor [Phanerochaete
chrysosporium] gi|1050302|gb|AAA87594
Length = 547
Score = 31.9 bits (69), Expect = 0.37
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 514 RPETLPMNQGC--GWRNPDGVAFRTTGDVDGETK 609
RP T+ N C G PDG +T GD+DGE K
Sbjct: 107 RPLTVQSNTWCSSGGVTPDGTLLQTGGDLDGERK 140
>At4g19830.1 68417.m02907 immunophilin / FKBP-type peptidyl-prolyl
cis-trans isomerase family protein similar to 70 kDa
peptidylprolyl isomerase (Peptidylprolyl cis-trans
isomerase) (PPiase) (Rotamase) (SP:Q43207) [Triticum
aestivum]; FKBP-type peptidyl-prolyl cis-trans
isomerase,Synechocystis sp., PIR2:S75144; contains Pfam
PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type
Length = 229
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 302 SLRTMTFRARPPTAKKGSASTITCAMRPITPLSLTEQTSSI 424
SLR R+ P++ S+ST+ A R LS+ TSS+
Sbjct: 26 SLRIFASRSSAPSSSSSSSSTVAAASRRSISLSIIAVTSSV 66
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 29.9 bits (64), Expect = 1.5
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Frame = +2
Query: 266 SLIGLHRPWCLASLRTMTFRARPPTAKKGSASTITCAMRPITPLSLTEQTSSI*ESAVAR 445
S+ GL RP S R+ + RP T + S + T RP+T + ++S+ A
Sbjct: 140 SVAGLRRPSSSGSSRSTS---RPATPTRRSTTPTTSTSRPVTTRASNSRSSTPTSRATLT 196
Query: 446 VHR--TSTSAVWLPTRD----RQQIPSRPGRRP 526
R TST+A T R P+R RP
Sbjct: 197 AARATTSTAAPRTTTTSSGSARSATPTRSNPRP 229
>At4g11860.1 68417.m01887 expressed protein contains Pfam domain
PF04424: Protein of unknown function (DUF544)
Length = 682
Score = 29.1 bits (62), Expect = 2.6
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Frame = +1
Query: 151 LASACAQNMDTGDLESIINQIFTSA---KPPTQLQP-VTQPSVADRAPSTLVPGVSTNDD 318
+ S+ A ++D G+LES ++ + + + P ++ S D AP+ +P VST++
Sbjct: 371 VTSSEALSVDKGNLESAKSESSSESVLKSDAASIDPDLSCRSQHDDAPNAFIPPVSTDEP 430
Query: 319 LSCQTSDGQEGECVNYYLCNAANNTIITDGTNVIDIRVGS--GPCSS 453
+ +G+ ECVN A+ + +G +++ RV G CSS
Sbjct: 431 M----YEGE--ECVNTVPPVCADKEPVYEGESLLGKRVEKDVGDCSS 471
>At2g37810.1 68415.m04642 CHP-rich zinc finger protein, putative
Length = 233
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Frame = +1
Query: 373 CNAANNTIITDGTNVIDIRVGSGPCSSYIDVCCL---APDQRPPTDPITPRPETLPMNQG 543
C A+N ++ G ++ R GPC + V C+ AP P + + P N
Sbjct: 131 CGASNTCMVCRGA-ILSWRYKCGPCMLDVHVECVNSSAPAATEPQMDLNTSQDPQPYNDE 189
Query: 544 CG 549
CG
Sbjct: 190 CG 191
>At5g47460.1 68418.m05861 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 576
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 513 GRDGICWRSLVGSQTADVDVR*TRATADSYID 418
G DG+ WR+L+G+ +A D++ + A I+
Sbjct: 488 GYDGVAWRALLGACSARKDLKAAKTVAAKMIE 519
>At3g58600.1 68416.m06531 expressed protein hypothetical protein
F21M11.17 - Arabidopsis thaliana, EMBL:AC003027
Length = 302
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +1
Query: 190 LESIINQIFTSAKPPTQLQPVTQPSVADRAPSTLVPGVSTNDDLSCQTSDGQEGE 354
+E+ I I PP L PVT A ++PS+L P +S Q D + E
Sbjct: 220 IETTIPSIILPPPPPGPLSPVT---TAQKSPSSLPPSLSLQRSSEQQDLDTKREE 271
>At5g65090.1 68418.m08187 endonuclease/exonuclease/phosphatase
family protein similar to inositol polyphosphate
5-phosphatase I (GI:10444261) and II (GI:10444263)
[Arabidopsis thaliana]; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 529
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -2
Query: 206 LMIDSRSPVSMFCAHADA--RKPMNRSLYIFGYYSQNITLTISNSQCSS*SNR 54
L+++ P + + A KP S+Y YS + T T S+S C S +R
Sbjct: 122 LVVEDNEPAAKWLALISQALNKPKQESVYSNAAYSASRTTTCSSSSCGSEESR 174
>At3g54320.1 68416.m06003 ovule development protein, putative
similar to ovule development protein aintegumenta
(GI:1209099) [Arabidopsis thaliana]
Length = 427
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 347 KGSASTITCAMRPITPLSLTEQTSSI*ESAVARVHRTSTSAVWLPTRDRQQIPSRP 514
K +T TC+ P + +S + TSS +S R R + P+ D+ P+ P
Sbjct: 2 KKRLTTSTCSSSPSSSVSSSTTTSSPIQSEAPRPKRAKRAKKSSPSGDKSHNPTSP 57
>At5g19340.1 68418.m02305 expressed protein
Length = 263
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 262 SVADRAPSTLVPGVSTNDDLSCQTSDGQEGECVN 363
++A+ PST P +S + DLS SDG + C+N
Sbjct: 8 TMAEAEPSTTGPRISFSADLSSSDSDG-DFICIN 40
>At1g63910.1 68414.m07236 myb family transcription factor (MYB103)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 370
Score = 27.5 bits (58), Expect = 8.0
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Frame = +1
Query: 133 LLFIGFLASACAQNMDTGDLESI-INQIFTSAKPPTQLQPVTQPSVADRAPSTLVPGVST 309
L F GF S N +I I + F S KPP + T P + ++ +
Sbjct: 159 LHFDGFTDSPNQLNFTNDQETNIKIQETFFSHKPPLFMVDTTLPILEGMFSENIITNNNK 218
Query: 310 NDDLSCQTSDGQEGECVNYYL 372
N+D G+E C +L
Sbjct: 219 NNDHDDTQRGGRENVCEQAFL 239
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,618,213
Number of Sequences: 28952
Number of extensions: 276852
Number of successful extensions: 905
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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