Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0789
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   2.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   4.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.7  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   8.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   8.1  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 529 SKLNVKRENQSLGPSPIRQR*IICNIIKRAYYYLGVLR 416
           S   ++R  Q++   P ++   ICNI KR Y  L  LR
Sbjct: 14  SLTRLRRHIQNVHTRPSKEP--ICNICKRVYSSLNSLR 49


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 154  SYYKKFTNTN*QKQCNVKFIMYKYLLHSQLKQE 56
            S+Y  F   + +  CN      +YLL   +KQ+
Sbjct: 957  SFYSSFLYKSSESSCNPDQKPTEYLLEDSMKQQ 989


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 747 SLCQPYKTQWRQTLNTLLKFQFFIWL 824
           ++C P+ +     L+  +KF   IWL
Sbjct: 155 AICHPFISHTMSKLSRAVKFIIVIWL 180


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 553 IVYLSSQIGFKAFEK*KSILAR 618
           I+Y  S  G KAFE+ + +L +
Sbjct: 285 IIYEESNYGIKAFEELEELLGK 306


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 220 IISPPNDITIHNI*PKKKLTYGSYYKKFTNTN 125
           IIS  ++ TIHN        Y +Y K + N N
Sbjct: 81  IISSLSNKTIHNNNNYNNNNYNNYKKLYYNIN 112


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 374 YDINPAVLRLADWST*NSKIIICSFDD 454
           YD+   VL+L  W+    K+ +   D+
Sbjct: 162 YDVQTCVLKLGSWTYDGFKVDLRHMDE 188


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 220 IISPPNDITIHNI*PKKKLTYGSYYKKFTNTN 125
           IIS  ++ TIHN        Y + Y  + N N
Sbjct: 314 IISSLSNKTIHNNNNYNNNNYNNNYNNYNNNN 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,458
Number of Sequences: 438
Number of extensions: 4634
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)