Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0787
(834 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35690.1 68418.m04267 expressed protein 32 0.54
At2g01130.1 68415.m00021 helicase domain-containing protein simi... 31 0.94
At1g03530.1 68414.m00334 expressed protein similar to hypothetic... 31 0.94
At2g46495.1 68415.m05788 zinc finger (C3HC4-type RING finger) fa... 30 2.2
At1g47970.1 68414.m05343 expressed protein 29 2.9
At3g51940.1 68416.m05697 expressed protein 29 5.0
At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein ... 28 6.6
At4g35810.1 68417.m05088 oxidoreductase, 2OG-Fe(II) oxygenase fa... 28 6.6
At2g40070.1 68415.m04923 expressed protein 28 6.6
At2g26470.1 68415.m03176 expressed protein contains PF02586: Unc... 28 6.6
At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containi... 28 6.6
At5g12230.1 68418.m01435 expressed protein 28 8.8
>At5g35690.1 68418.m04267 expressed protein
Length = 603
Score = 31.9 bits (69), Expect = 0.54
Identities = 18/79 (22%), Positives = 35/79 (44%)
Frame = +2
Query: 545 KYNQRLKMGDPVKDDERKVFSSDDATDSTSQWYLQAMNHKGDLLFFIFNRRYSQALKIGK 724
KY+ + G +KD ++ T T + + +N KG L F+ +S
Sbjct: 23 KYSVEIDSGASLKDLGYELRKLTGVTSETLRLIVPRLNEKGSSLMLPFSDEHSSLSLQES 82
Query: 725 DVVNNEDFRIYGESEDAAE 781
+++ ++ R+ G SE+ E
Sbjct: 83 NIIEDKTIRMMGVSEEEVE 101
>At2g01130.1 68415.m00021 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 1112
Score = 31.1 bits (67), Expect = 0.94
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +2
Query: 122 DSGKSDRKLYNSVITADYDDATKRCEQLQSEPDGSYIIKNTVTELLNNAESNTINFSYKL 301
D DR+ + AD DD KR L + +I + + + + + L
Sbjct: 39 DRVSEDRQPEGTFHCADLDDWNKRFSMLLKDSLKQEVISREKKDRRDFDKLAALATTLGL 98
Query: 302 WTTGHQNIVQ-SCFPL-EFRLILDDKKDCKIINKHDDL 409
++ + +V S PL +R LDDKK + +N H DL
Sbjct: 99 YSHAYAKVVVFSKIPLPNYRFDLDDKKPQREVNLHTDL 136
>At1g03530.1 68414.m00334 expressed protein similar to hypothetical
protein GB:O14360
Length = 797
Score = 31.1 bits (67), Expect = 0.94
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 365 DDKKDCKIINKHDDLYMTLSKDLD-QNGDRDAYGDEDD 475
++K + ++ K DDL L ++LD +NGD D ++DD
Sbjct: 282 EEKFEHMVVGKEDDLAGDLKRNLDEENGDDDIEDEDDD 319
>At2g46495.1 68415.m05788 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 878
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 777 AASSLSPYILKSSLFTTSLPIFRACE--YLRLNIKNKRSP 664
A + S Y+ +S L + P R CE YLR KNK SP
Sbjct: 477 AETRFSSYLNQSLLLEWNSPNCRGCEIDYLRCGFKNKASP 516
>At1g47970.1 68414.m05343 expressed protein
Length = 198
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 365 DDKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGDEDD 475
DD D +++ + ++D D+ GD D GD+DD
Sbjct: 62 DDDDDVQVLQSLGGPPVQSAEDEDEEGDEDGNGDDDD 98
>At3g51940.1 68416.m05697 expressed protein
Length = 453
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 437 QNGDR-DAYGDEDDHKNSWKFMSSWESNRVYF 529
QN +R D+YG ++KNSW +++ +V F
Sbjct: 419 QNKERVDSYGYHSNYKNSWPRRDDYQNRKVNF 450
>At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 493
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 398 HDDLYMTLSKDLDQNGDRDAYGDEDDHKNSWKFMSSWESN 517
HDD ++ S D D + D D D+DD +NS W+SN
Sbjct: 181 HDDEFI--SSDYDDDDDFDDDDDDDDDENS----ELWDSN 214
>At4g35810.1 68417.m05088 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Rattus norvegicus [GI:474940], Mus
musculus [SP|Q60715], Homo sapiens [GI:18073925];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 290
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 392 NKHDDLYMTLSKDLDQNGDRDAYGDEDD-HKNSWKFMSSWESNRVYFKIF 538
NK + M L+ + +R+++GDE+D + + W + SWE + F
Sbjct: 46 NKTSSMPMDLTTIVQTIQERESFGDEEDGNGDRWLEVISWEPRAFVYHNF 95
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 797 RNNVASRQHLRSRHIS*NPRCSQRPYRSSGPAS 699
RN++ SRQ S +S + S+RP S GP S
Sbjct: 152 RNHLTSRQQTSSPGLSSSSGASRRPSSSGGPGS 184
>At2g26470.1 68415.m03176 expressed protein contains PF02586:
Uncharacterized ACR, COG2135; weak similarity to NF-M
protein (GI:205688) [Rattus norvegicus]
Length = 487
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Frame = +2
Query: 53 KLKILTTLSVIIATFFNMSVEASDSGKSDRKLYNSVITAD-----------YDDATKRCE 199
++ + T+ + +I+ FF+ +D G + K ++ I D + D+ K+ E
Sbjct: 232 QIPLKTSQNSLISKFFSTKQPKTDEGDKETKSTDANIIVDLKKEPTAEKDTFSDSIKKIE 291
Query: 200 QLQSEPDGSYIIKNTVTELLNNAE 271
+L E D S + KN + + AE
Sbjct: 292 ELDGEKDMSNVAKNLEFQEIVKAE 315
>At1g30290.1 68414.m03704 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 802
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Frame = +2
Query: 452 DAYGDEDDHKNSWKFMSSWESNRV---------YFKIFNPKYNQRLKMGDPVKDDERKVF 604
D+ EDDH ++ + +S+ + + +I NP++N+ ++G+ D+E V
Sbjct: 45 DSSSQEDDHFGEFRQLGFGKSSALNATSVGDPEFGEIRNPRFNEIDELGEDDDDEEGNVT 104
Query: 605 SSDDATD 625
S D+ D
Sbjct: 105 SGDELDD 111
>At5g12230.1 68418.m01435 expressed protein
Length = 221
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 368 DKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGDEDDHKNS 487
DK + KH + SKD D++ DRD D++ H +S
Sbjct: 136 DKDKDREHKKHKHKHKDRSKDKDKDKDRDRKKDKNGHHDS 175
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,503,435
Number of Sequences: 28952
Number of extensions: 372666
Number of successful extensions: 1101
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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