Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0785
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    27   3.8  
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    26   6.7  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   8.9  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   8.9  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    25   8.9  

>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 558 IVSFTQSYKNYPD*LHILIKYCLF*CMYVMLF 463
           +VSF  S++   D L+   K CLF C+ + +F
Sbjct: 1   MVSFESSFERGTDFLNRNFKKCLFACISIFIF 32


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -3

Query: 742 RFGLRVPLLGHKIFKKTLIEVRSKFHKLK 656
           RFG+RV  L +++ +K ++ +   FH ++
Sbjct: 84  RFGVRVENLHYQVLEKDVLSLFENFHPIR 112


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 115 INIR*FILPFLYWHF 159
           +  R F+LPFL+W F
Sbjct: 384 VEFRYFLLPFLFWRF 398


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 494 AYFDVCMLCYFFFQTLP 444
           AYF  C L YFF +T P
Sbjct: 275 AYFSTCSLLYFFERTGP 291


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = -1

Query: 252 KFSNSRDLIFTQLFF*FSKYFSHLYDQFETSKMPIQKW*NELSNIYIMF 106
           + SN RD+    LF+  S +  +L   F  +  P + W   +++  ++F
Sbjct: 143 QLSNRRDVWDAPLFYRSSNFSGNLQYNFSFNTDPFEFWITRIADDQVLF 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,958
Number of Sequences: 5004
Number of extensions: 52386
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)