Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0783
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    29   0.50 
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    29   0.50 
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    29   0.66 
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    29   0.66 
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    29   0.87 
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    27   3.5  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   4.6  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    26   6.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.1  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   6.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   6.1  
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    25   8.1  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = -1

Query: 701 QITVEQGLHIVVALGASAGREHQRPRQLDIHRVRPHRHHYRKIFHQAYPDD---VDAPVR 531
           Q TV++G+H  VA         +RP+ L++ R +P ++  + + H +  D+   +  P+ 
Sbjct: 10  QKTVQKGIHNKVARKVRTSTTFRRPKTLELAR-KP-KYARKSVPHASRLDEYKIIVNPIN 67

Query: 530 NEEVLQNVEVGNQMKNQSH 474
           +E  ++ +E  N +    H
Sbjct: 68  SESAMKKIEDDNTLVFHVH 86


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 10/44 (22%), Positives = 18/44 (40%)
 Frame = -1

Query: 653 SAGREHQRPRQLDIHRVRPHRHHYRKIFHQAYPDDVDAPVRNEE 522
           S    +      D+H    H HH+    H ++ DD  +P   ++
Sbjct: 281 STNHHNNHESDKDLHHEGHHHHHHHHHHHHSHDDDPSSPAEKKQ 324


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = -1

Query: 701 QITVEQGLHIVVALGASAGREHQRPRQLDIHRVRPHRHHYRKIFHQAYPDD---VDAPVR 531
           Q TV++G+H  VA         +RP+ L + R +P ++  + + H    D+   +  P+ 
Sbjct: 10  QKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSR-KP-KYARKSVAHAPRLDEYKIIVNPIN 67

Query: 530 NEEVLQNVEVGNQMKNQSH 474
           +E  ++ +E  N +    H
Sbjct: 68  SESAMKKIEDDNTLVFHVH 86


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +2

Query: 125 SGSNSPQQMSNQWNNKMANGSIEDGQNMYQNRSMNQQAPRFSNQNQGIQSYRQNNY 292
           + S SPQ      N+ ++      G    +N+S    A  F NQ  GI    Q NY
Sbjct: 232 NSSTSPQDNFGTSNSALSRNLDLFGSPSSENKSTAGSASLFPNQQMGIDLQAQENY 287


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +2

Query: 122 NSGSNSPQQMSNQWNNKMANGSIEDGQNMYQNRSMNQQAPRFSNQNQGI---QSYRQNNY 292
           +SG+N+    SN  N    N    + Q+   + S+   A  F N + G    Q+Y  NN 
Sbjct: 559 SSGNNNNNNNSNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQNYNNNNN 618

Query: 293 Q 295
           Q
Sbjct: 619 Q 619


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 188 IEDGQNMYQNRSMNQQAPRFSNQN 259
           ++D QN+ QN S N   P FS+Q+
Sbjct: 178 MQDYQNLQQNGSSNTTIPSFSSQH 201


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
 Frame = +2

Query: 101 WQQRKDKNSGSNSPQQMSNQWNNKMAN--GSIED-GQNMYQNRSMNQQAPRFSNQNQGIQ 271
           WQ R  KNS   S     N +N  + N  G  ED  + +  N S     P  +N    + 
Sbjct: 256 WQPRSQKNSEKGSSIYPQNSFNASIDNEGGPYEDFFKVVVDNVSSRDWQPVLANLKLELA 315

Query: 272 SYRQN 286
            +RQ+
Sbjct: 316 KFRQD 320


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 236  PVGSCYDFGTCFDHLQCCHWPFCCSIGCSFAVVSW 132
            P  SCY F  CFDH    ++  C     +  V +W
Sbjct: 1293 PKRSCYAF--CFDHQHPGYFILCFKASVNSPVTAW 1325


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +3

Query: 276 TDKTTIRNKYLSQAPMFSSPWEIIKVDITMVTKILTTKMDMVNGPSTTSVIMGNNIVTMV 455
           T  TT      +  P  S+P       I+  T + +T +   N  ++TSV+  +  VT  
Sbjct: 489 TPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTST 548

Query: 456 QMAT 467
            +AT
Sbjct: 549 PLAT 552


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +2

Query: 104 QQRKDKNSGSNSPQQMSNQWNNKMANGSIEDGQNMYQNRSMNQQAPRFSNQNQGIQSYRQ 283
           ++ ++ +  +NS  Q      +K++N  +E     YQ R +N++     N  QGI    +
Sbjct: 137 EEERNVSLSNNSSGQRQPLTESKISNSQLE-----YQQRLINERQGEIENLTQGINELNE 191


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +2

Query: 179 NGSIEDGQNMYQNRSMNQQAPRFSNQNQGIQSYRQNNYQ 295
           +GS+++ Q+ Y  ++  +Q   F N+ + IQS+ + + Q
Sbjct: 443 SGSLKEEQSYYGLKNSIKQIKAFENKLKYIQSFHEKHQQ 481


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -1

Query: 182 HWPFCCSIGCSFAVVSWIHYFYPCVVASDSDLNYCYYF*PYQLI*LEDFVQFPEV 18
           H P+C S+   F++   +  F  C  +     +    F  Y L+   D VQFP +
Sbjct: 151 HMPYCSSVPFEFSIEIGVISFCRCKPSLVFPPHLKINFVAYSLVGNVDNVQFPYI 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,826,479
Number of Sequences: 5004
Number of extensions: 59483
Number of successful extensions: 187
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)