Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0783
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1110 + 26154024-26154314,26154400-26154944,26155023-261551... 34 0.097
07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601 32 0.52
11_01_0053 - 401578-401824,401996-402079,402201-402388,402713-40... 31 1.2
12_02_1093 + 26023692-26023865,26023959-26024026,26024155-260241... 30 1.6
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 30 1.6
03_06_0566 + 34760991-34761186,34761283-34761455,34762370-347624... 30 1.6
05_02_0049 - 6083364-6084111,6084140-6084246 28 8.4
03_05_0955 + 29168771-29170507 28 8.4
03_05_0939 - 28983091-28983747,28983805-28983913,28984245-289848... 28 8.4
03_04_0123 + 17475020-17475243,17475367-17475445,17476295-174763... 28 8.4
01_06_0678 - 31114259-31114321,31114508-31114552,31114644-311147... 28 8.4
>12_02_1110 +
26154024-26154314,26154400-26154944,26155023-26155109,
26155237-26155293,26155369-26155607,26155715-26155833,
26155945-26156031,26156117-26156194
Length = 500
Score = 34.3 bits (75), Expect = 0.097
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 538 GASTSSGYAWWKILR*WCRWGRTLWISSCRGRWCSLPALAPR 663
GA+ + ++WW ++ WG +W +C+ W L LA R
Sbjct: 223 GAALTLSFSWWVLVA--LTWGLMVWTPACKETWTGLSVLAFR 262
>07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601
Length = 390
Score = 31.9 bits (69), Expect = 0.52
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = -1
Query: 677 HIVVALGASAGREHQRPRQLDIHRVRPHRHHYRKIFHQAYPDDVDAPVRNEEVLQNVEVG 498
H VV G G EH+ + H H H + DD + +R+ + Q +E+G
Sbjct: 185 HHVVGDGGGGGEEHEGQVHVHTHATHGHAHGSSALVAAVGEDDKETTLRHRVISQVLELG 244
>11_01_0053 -
401578-401824,401996-402079,402201-402388,402713-402779,
402905-403105,403712-403789,404358-404374
Length = 293
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 590 HHYRKIFHQAYPDDVDAPVRNEEVLQNVEVGNQM-KNQSHWLCCH 459
H Y K++ AY + VR +V + E+G ++ K+ L CH
Sbjct: 201 HDYLKLYFPAYRPQIGGKVRGHQVSRVWELGERLGKDDGRCLACH 245
>12_02_1093 +
26023692-26023865,26023959-26024026,26024155-26024198,
26024287-26025035,26025506-26025595,26026174-26026235,
26026360-26026465
Length = 430
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 104 QQRKDKNSGSNSPQQMSNQWNNKMANGSIEDGQNMYQNRSMNQQAPRFSNQNQGIQ 271
+++ ++ GSN P + N + K++NGS ED R P+ N Q ++
Sbjct: 301 KRKLEEVEGSNLPAKEDNTASQKLSNGSSEDDGAKPNKRQKKSSEPKTVNAFQRVK 356
>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
Length = 427
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Frame = +2
Query: 116 DKNSGSNSPQQMSNQWNNKMANGSIED-----GQNMY-QNRSMNQQAPRFSNQNQGIQSY 277
+ N N+ SN NN M G +++ G N Y NR N Q ++ Q Q
Sbjct: 190 NNNDNDNNDNNNSNSSNNGMYFGEVDEYFDLVGYNSYYDNRIENNQDRQYGMHEQQEQQQ 249
Query: 278 RQNNYQKQ 301
+Q QK+
Sbjct: 250 QQQEMQKE 257
>03_06_0566 +
34760991-34761186,34761283-34761455,34762370-34762416,
34762546-34762640,34762734-34762816,34763331-34763399,
34763874-34764059,34764374-34764508,34764774-34764908,
34765148-34765218,34765393-34765470,34765626-34765767,
34765940-34766050
Length = 506
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Frame = -1
Query: 620 LDIHRVRPHRHHYRKIFH--------QAYPDDVDAPVRNEEVLQNVEVGNQMKNQSHWLC 465
LD+ R H +++ FH A+ D V + + E++LQ ++G+ M N+SH+ C
Sbjct: 360 LDVLRAAKHFKLFQRAFHVYSEARRVYAFRDTVLSKLSAEDMLQ--KLGDLM-NESHYSC 416
Query: 464 CHLYHC 447
LY C
Sbjct: 417 SVLYEC 422
>05_02_0049 - 6083364-6084111,6084140-6084246
Length = 284
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -2
Query: 628 HGSLISTGSAPTDTTTVKFSTKHILMMWMHLCVMRRCCKMWRW 500
+G++++ AP D+ T +T + H C +R K+W+W
Sbjct: 241 NGTVLAPAPAPADSDTAA-TTAATVSTAAHSCKVRVRVKIWKW 282
>03_05_0955 + 29168771-29170507
Length = 578
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 500 PPPHFATPPHYAQVHPHHQDML 565
PPP P H+ Q H HH +
Sbjct: 42 PPPQSMAPHHHQQKHHHHHQQM 63
>03_05_0939 -
28983091-28983747,28983805-28983913,28984245-28984801,
28985197-28985414,28985508-28985613,28986352-28986429
Length = 574
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +3
Query: 249 LTRTKEFRVTDKTTIRNKYLSQAPMFSSPWEIIKVDITMVTKILTTKMDMVNG 407
L T E R DK +A F++PW I V KIL + M + G
Sbjct: 313 LEHTDELRCLDKAATITDLDVKADSFTNPWRICTVTQVEELKILMSTMFVEQG 365
>03_04_0123 +
17475020-17475243,17475367-17475445,17476295-17476393,
17476499-17476682,17477139-17477206,17477530-17477787,
17477996-17478049,17478149-17478355,17478507-17478633,
17479409-17479575
Length = 488
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 122 NSGSNSPQQMSNQWNNKMANGSIEDGQNMYQNRSMNQQAPRFSNQNQ 262
NS S Q Q+N + +++ G QN++ N P+ QNQ
Sbjct: 441 NSTSMMGMQQQQQFNMQANAQNLQQGMTGLQNQTQNPNFPQQRQQNQ 487
>01_06_0678 -
31114259-31114321,31114508-31114552,31114644-31114742,
31114827-31114872,31115026-31115102,31115385-31115432,
31120640-31120708,31120848-31120853,31120955-31121032,
31121246-31121344,31121427-31121489,31122642-31122713,
31122800-31122874,31122965-31123021,31123983-31124186,
31124317-31124394,31124485-31124547,31124646-31125284,
31125367-31125416,31125496-31125576,31125896-31125923
Length = 679
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 104 QQRKDKNSG-SNSPQQMSNQWNNKMANGSIEDGQNMYQNRSM 226
+ + K G S+SP+ NQ +K+ +GS++D + + R +
Sbjct: 229 KSQDSKREGLSDSPESTENQQEHKLDSGSVKDQDQLEEARGL 270
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,113,691
Number of Sequences: 37544
Number of extensions: 418575
Number of successful extensions: 1338
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1336
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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