Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0783
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1 (PL...    31   0.57 
At5g62090.2 68418.m07793 expressed protein                             30   1.3  
At5g62090.1 68418.m07792 expressed protein                             30   1.3  
At1g78160.1 68414.m09108 pumilio/Puf RNA-binding domain-containi...    30   1.7  
At4g38960.1 68417.m05520 zinc finger (B-box type) family protein...    29   2.3  
At3g63260.2 68416.m07109 protein kinase, putative (MRK1) identic...    29   2.3  
At3g63260.1 68416.m07108 protein kinase, putative (MRK1) identic...    29   2.3  
At3g06580.1 68416.m00764 galactokinase (GAL1) identical to galac...    29   2.3  
At1g62200.1 68414.m07016 proton-dependent oligopeptide transport...    29   3.0  
At5g44290.1 68418.m05421 protein kinase family protein contains ...    28   7.0  
At4g32190.1 68417.m04581 centromeric protein-related low similar...    28   7.0  
At2g36400.1 68415.m04467 expressed protein nearly identical to t...    28   7.0  
At1g44770.1 68414.m05129 expressed protein                             28   7.0  
At2g20630.2 68415.m02417 protein phosphatase 2C, putative / PP2C...    27   9.3  
At2g20630.1 68415.m02418 protein phosphatase 2C, putative / PP2C...    27   9.3  

>At2g42010.1 68415.m05197 phospholipase D beta 1 / PLD beta 1
           (PLDBETA1) identical to SP|P93733 Phospholipase D beta 1
           (EC 3.1.4.4) (AtPLDbeta1) (PLD beta 1) (PLDbeta)
           {Arabidopsis thaliana}; contains Pfam profiles: PF00614
           phospholipase D.active site motif, PF00168 C2 domain
          Length = 1083

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 500 PPPHFATPPHYAQVHPHHQ 556
           PPP +ATPP YA   P HQ
Sbjct: 49  PPPPYATPPPYASPPPPHQ 67


>At5g62090.2 68418.m07793 expressed protein
          Length = 816

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +2

Query: 101 WQQRKDKNSGSNSPQQMSNQWNNKMANGSIEDGQNMYQNRSMNQQAPRFSNQNQGIQSYR 280
           WQQ  + N GS   QQ  +  N  M N +   G+N         + P  SN+ +GI+   
Sbjct: 722 WQQMANSNGGSGQQQQSLSGQN--MMNCNTNMGRNRTDYVPAAAETPSTSNRFRGIKGLD 779

Query: 281 QN 286
           Q+
Sbjct: 780 QS 781


>At5g62090.1 68418.m07792 expressed protein
          Length = 816

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +2

Query: 101 WQQRKDKNSGSNSPQQMSNQWNNKMANGSIEDGQNMYQNRSMNQQAPRFSNQNQGIQSYR 280
           WQQ  + N GS   QQ  +  N  M N +   G+N         + P  SN+ +GI+   
Sbjct: 722 WQQMANSNGGSGQQQQSLSGQN--MMNCNTNMGRNRTDYVPAAAETPSTSNRFRGIKGLD 779

Query: 281 QN 286
           Q+
Sbjct: 780 QS 781


>At1g78160.1 68414.m09108 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806 Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain) (8 copies at C-terminal half of protein)
          Length = 650

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 119 KNSGSNSPQQMS--NQWNNKMANGSIEDGQNMYQNRSMNQQAPRFSNQNQGIQSYRQNNY 292
           +N   N+PQQ    +  ++        +GQ +++NR   ++   +S  +Q   SY+  NY
Sbjct: 204 RNMFGNNPQQFGWPSYSSSNSGTSPYNNGQEIFENRGGMREYSAYSPPHQPEVSYKHQNY 263

Query: 293 Q 295
           +
Sbjct: 264 R 264


>At4g38960.1 68417.m05520 zinc finger (B-box type) family protein
           zinc finger protein - Oryza sativa, PID:d1034167
          Length = 183

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +2

Query: 113 KDKNSGSNSPQQMSNQWNNKMANGSIEDGQNMYQNRSMNQQAPRFSNQNQGIQSYRQNNY 292
           K+ N+  N   Q  +   N  ANG I+D   M    +  Q+    S+ N GI    +NN+
Sbjct: 109 KENNTRDNLQNQRVSTNGNGEANGKIDD--EMIDLNANPQRVHEPSSNNNGIDVNNENNH 166

Query: 293 Q 295
           +
Sbjct: 167 E 167


>At3g63260.2 68416.m07109 protein kinase, putative (MRK1) identical
           to ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079
          Length = 344

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 221 YDFGTCFDHLQCCHWPFCCSIGCSFAVVS 135
           Y FG C   + CC  P+     CSFA +S
Sbjct: 292 YSFGVCLWEIYCCDMPYA---DCSFAEIS 317


>At3g63260.1 68416.m07108 protein kinase, putative (MRK1) identical
           to ATMRK1 [Arabidopsis thaliana] gi|2351097|dbj|BAA22079
          Length = 391

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 221 YDFGTCFDHLQCCHWPFCCSIGCSFAVVS 135
           Y FG C   + CC  P+     CSFA +S
Sbjct: 292 YSFGVCLWEIYCCDMPYA---DCSFAEIS 317


>At3g06580.1 68416.m00764 galactokinase (GAL1) identical to
           galactokinase (Galactose kinase) [Arabidopsis thaliana]
           SWISS-PROT:Q9SEE5
          Length = 496

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 22/87 (25%), Positives = 43/87 (49%)
 Frame = -1

Query: 707 EIQITVEQGLHIVVALGASAGREHQRPRQLDIHRVRPHRHHYRKIFHQAYPDDVDAPVRN 528
           EI+  +E+ L  +V    ++           +H+   H +   +  H  + D V++ + +
Sbjct: 330 EIEKILEEKLPSIVNNDPTSLAVLNAATHFKLHQRAAHVYSEARRVH-GFKDTVNSNLSD 388

Query: 527 EEVLQNVEVGNQMKNQSHWLCCHLYHC 447
           EE L+  ++G+ M N+SH+ C  LY C
Sbjct: 389 EEKLK--KLGDLM-NESHYSCSVLYEC 412


>At1g62200.1 68414.m07016 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family ; contains non-consensus GA donor site at intron
           4
          Length = 590

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 249 LTRTKEFRVTDKTTIRNKYLSQAPMFSSPWEIIKVDITMVTKILT 383
           +  T  ++  DK  + ++Y S++  FS+PW++  V  T V ++ T
Sbjct: 318 IQHTDGYKFLDKAAVISEYESKSGAFSNPWKLCTV--TQVEEVKT 360


>At5g44290.1 68418.m05421 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 644

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 134 NSPQQMSNQWNNKMANGSIEDGQNMYQNRSMNQQAPRFSNQNQGIQSYRQNN 289
           NS +QM +   N   +G +     M +NR++++      N    I SYR N+
Sbjct: 502 NSQRQMQDMTCNNPTSGRVSHSGPMMKNRNLSRLTYVKDNAAPRIPSYRANS 553


>At4g32190.1 68417.m04581 centromeric protein-related low similarity
           to SP|Q02224 Centromeric protein E (CENP-E protein)
           {Homo sapiens}
          Length = 783

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 602 RPHRHHYRKIFHQAYPDDVDAPVRNEEVLQN 510
           R HR   +   H  YPDD D P  N  VL++
Sbjct: 82  RTHRLERQTNQHSVYPDDDDLPYSNLGVLES 112


>At2g36400.1 68415.m04467 expressed protein nearly identical to
           transcription activator GRL3 [Arabidopsis thaliana]
           GI:21539884 (unpublished); supporting cDNA
           gi|21539883|gb|AY102636.1|
          Length = 398

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +1

Query: 202 KHVPKS*HEPTGTT----IF*PEPRNSELQTKQLSETSTFPKPQCF 327
           KHV    H  T T+    +F PEP +S+L +     +S FPK   F
Sbjct: 31  KHVFDQIHSHTATSTALPLFTPEPTSSKLSSLSPDSSSRFPKMGSF 76


>At1g44770.1 68414.m05129 expressed protein
          Length = 271

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 536 VRNEEVLQNVEVGNQMKNQSHWLCCHLYHCYDIVAHYYAGC 414
           V ++ V  NVE  + + N+ H++  +  H  D VAH+ A C
Sbjct: 152 VTDDMVPSNVEEQSAIDNE-HYIVVNEEHVIDAVAHFLAKC 191


>At2g20630.2 68415.m02417 protein phosphatase 2C, putative / PP2C,
           putative
          Length = 290

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +3

Query: 243 DFLTRTKEFRVTDKTTIRNKYLS-QAPMFSSPWEIIKVDITMVTKILTTKMDMV--NGPS 413
           D + + K+F    K  IRN Y+S  A +     ++ K   T VT IL     +V  N   
Sbjct: 85  DNILKEKDFWTDTKNAIRNAYISTDAVILEQSLKLGKGGSTAVTGILIDGKTLVIANVGD 144

Query: 414 TTSVIMGNNIVTMVQMATKP 473
           + +V+  N + + + +  +P
Sbjct: 145 SRAVMSKNGVASQLSVDHEP 164


>At2g20630.1 68415.m02418 protein phosphatase 2C, putative / PP2C,
           putative
          Length = 279

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +3

Query: 243 DFLTRTKEFRVTDKTTIRNKYLS-QAPMFSSPWEIIKVDITMVTKILTTKMDMV--NGPS 413
           D + + K+F    K  IRN Y+S  A +     ++ K   T VT IL     +V  N   
Sbjct: 85  DNILKEKDFWTDTKNAIRNAYISTDAVILEQSLKLGKGGSTAVTGILIDGKTLVIANVGD 144

Query: 414 TTSVIMGNNIVTMVQMATKP 473
           + +V+  N + + + +  +P
Sbjct: 145 SRAVMSKNGVASQLSVDHEP 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,150,464
Number of Sequences: 28952
Number of extensions: 331585
Number of successful extensions: 1078
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)