Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0781
         (485 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0241 + 1595188-1595498,1596621-1596654,1596791-1596979,159...    28   4.6  
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888...    27   6.0  
02_05_0114 + 25958834-25961296                                         27   6.0  

>02_01_0241 +
           1595188-1595498,1596621-1596654,1596791-1596979,
           1597956-1598045,1598136-1598201,1598680-1598892
          Length = 300

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 69  LVLYYSIKFKVLLNLVFIYPNYDFGNCFYHYT 164
           L+ Y  I F VLL+L+ +    D G  FY+YT
Sbjct: 72  LLGYRLISFFVLLSLLIVIVISDGGTIFYYYT 103


>11_06_0621 +
           25587476-25587604,25588230-25588423,25588800-25588874,
           25589434-25591852
          Length = 938

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +2

Query: 320 IVYSFPCF--IQIADSTIMYLH*VK*IGCHLVQSFLRIGANTKCQKGNLN 463
           + Y   CF  + +    I Y    K  G HL +    I  +T C+ GN+N
Sbjct: 485 VSYLLQCFRKLGMTSEAIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNMN 534


>02_05_0114 + 25958834-25961296
          Length = 820

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +2

Query: 320 IVYSFPCF--IQIADSTIMYLH*VK*IGCHLVQSFLRIGANTKCQKGNLN 463
           + Y   CF  + +    I Y    K  G HL +    I  +T C+ GN+N
Sbjct: 367 VSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNMN 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,095,765
Number of Sequences: 37544
Number of extensions: 118465
Number of successful extensions: 153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)