SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0781
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   5.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   5.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   5.3  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    21   9.2  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 132 YDFGNCFYHYTLI*LCNTY 188
           Y+F N  +HY  I L +TY
Sbjct: 130 YEFLNAIHHYDDIWLPDTY 148


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 132 YDFGNCFYHYTLI*LCNTY 188
           Y+F N  +HY  I L +TY
Sbjct: 130 YEFLNAIHHYDDIWLPDTY 148


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 132 YDFGNCFYHYTLI*LCNTY 188
           Y+F N  +HY  I L +TY
Sbjct: 181 YEFLNAIHHYDDIWLPDTY 199


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 132 YDFGNCFYHYTLI*LCNTY 188
           Y+F N  +HY  I L +TY
Sbjct: 130 YEFLNAIHHYDDIWLPDTY 148


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 124 ILITISGIVFIIIHLSS 174
           ILI+ + I+F I+H+SS
Sbjct: 26  ILISYALILFNILHMSS 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,493
Number of Sequences: 438
Number of extensions: 1642
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -