Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0780
         (781 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42850.2 68418.m05223 expressed protein                             75   7e-14
At5g42850.1 68418.m05222 expressed protein                             75   7e-14
At5g04260.1 68418.m00417 thioredoxin family protein low similari...    31   0.65 
At5g06690.1 68418.m00756 thioredoxin family protein low similiar...    30   1.5  
At3g56420.1 68416.m06275 thioredoxin family protein similar to t...    29   2.6  
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ...    29   4.6  
At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN) i...    29   4.6  
At1g52650.1 68414.m05945 F-box family protein contains F-box dom...    28   6.0  

>At5g42850.2 68418.m05223 expressed protein
          Length = 134

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
 Frame = +1

Query: 229 SRGPPVFFYFSGSKLPD-GNSWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGDREYWKDK 405
           SR    F  F     P  G SWCPDCV AEPV+   L E  + +  +    GDR  W+  
Sbjct: 26  SRSKINFILFLADNDPTTGQSWCPDCVRAEPVIYKTLEEFPEEVKLIRAYAGDRPTWRTP 85

Query: 406 ECPFRTDSRSKLMVIPTLIKWKG 474
             P+R DSR KL  +PTL++W G
Sbjct: 86  AHPWRVDSRFKLTGVPTLVRWDG 108


>At5g42850.1 68418.m05222 expressed protein
          Length = 134

 Score = 74.5 bits (175), Expect = 7e-14
 Identities = 35/83 (42%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
 Frame = +1

Query: 229 SRGPPVFFYFSGSKLPD-GNSWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGDREYWKDK 405
           SR    F  F     P  G SWCPDCV AEPV+   L E  + +  +    GDR  W+  
Sbjct: 26  SRSKINFILFLADNDPTTGQSWCPDCVRAEPVIYKTLEEFPEEVKLIRAYAGDRPTWRTP 85

Query: 406 ECPFRTDSRSKLMVIPTLIKWKG 474
             P+R DSR KL  +PTL++W G
Sbjct: 86  AHPWRVDSRFKLTGVPTLVRWDG 108


>At5g04260.1 68418.m00417 thioredoxin family protein low similarity
           to SP|P29429 Thioredoxin. [Aspergillus nidulans]
           {Emericella nidulans}; contains Pfam profile: PF00085
           Thioredoxin
          Length = 192

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 286 SWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPTLIK 465
           +WC  C+  +P +    +E    + F +VDV           P+R  SR+ +  +PT+  
Sbjct: 108 AWCRKCIYLKPKLEKLAAEFYPRLRFYHVDV--------NAVPYRLVSRAGVTKMPTIQL 159

Query: 466 WKGVQR 483
           W+  Q+
Sbjct: 160 WRDGQK 165


>At5g06690.1 68418.m00756 thioredoxin family protein low similiarity
           to SP|P34723 Thioredoxin {Penicillium chrysogenum};
           contains Pfam profile: PF00085 Thioredoxin
          Length = 210

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +1

Query: 286 SWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPTLIK 465
           SWC  C+  +P +    +E +    F YVDV         + P     R  +  +PT+  
Sbjct: 128 SWCRKCIYLKPKLEKLAAEYNNRAKFYYVDV--------NKVPQTLVKRGNISKMPTIQL 179

Query: 466 WK 471
           WK
Sbjct: 180 WK 181


>At3g56420.1 68416.m06275 thioredoxin family protein similar to
           thioredoxin [Nicotiana tabacum] GI:20047; contains Pfam
           profile: PF00085 Thioredoxin
          Length = 100

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 289 WCPDCVEAEPVVRHYLSELDKSIIFVYVDV 378
           WC  C + EPV R   S    S+IFV VDV
Sbjct: 19  WCVPCKKIEPVFRDLASRY-PSMIFVTVDV 47


>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
            binding domain-containing protein contains Pfam profiles
            PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
            binding domain
          Length = 2176

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 268  KLPDGNSWCPDCVEAEPVVRHYL 336
            ++PDGN +CP CV A+ + +  L
Sbjct: 1323 RIPDGNWYCPSCVIAKRMAQEAL 1345


>At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN)
           identical to SP|Q39239 Thioredoxin H-type 4 (TRX-H-4)
           {Arabidopsis thaliana}
          Length = 119

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 286 SWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGD 384
           SWCP C    P+      +   S IF  VDV +
Sbjct: 38  SWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDE 70


>At1g52650.1 68414.m05945 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 465

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 132 IFIYFLNTYKLPTVKLCIEKFMKILYRALGKIII 31
           IF+  L T  L +VKLC++KF      AL ++++
Sbjct: 156 IFLPMLKTLVLHSVKLCVDKFFFRALPALEELVL 189


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,184,745
Number of Sequences: 28952
Number of extensions: 304990
Number of successful extensions: 744
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)