Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0779
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0715 + 20889399-20890111,20890950-20891060,20891128-208913... 32 0.46
02_05_0967 - 33148283-33148524,33148602-33148881,33148959-331491... 30 1.4
10_01_0341 - 3758835-3759599,3760302-3760349 29 2.4
06_03_0223 - 18391177-18391287,18391570-18392081,18392200-183930... 29 4.2
08_02_1096 - 24280910-24281195,24281326-24281711 28 5.6
07_03_0716 + 20905041-20905851,20906644-20906825,20907117-209073... 28 5.6
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744... 28 7.4
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 27 9.8
04_04_0322 - 24374624-24377698 27 9.8
04_04_0298 + 24228569-24228763,24229792-24229900,24230001-242300... 27 9.8
03_02_0411 + 8217324-8218172 27 9.8
02_04_0193 - 20801959-20802583,20803372-20803448,20803530-208036... 27 9.8
>07_03_0715 +
20889399-20890111,20890950-20891060,20891128-20891338,
20891414-20891474,20891719-20891956,20892046-20892196,
20892415-20892703,20893464-20894207,20894720-20894851,
20895728-20895965,20896159-20896246,20896422-20896697
Length = 1083
Score = 31.9 bits (69), Expect = 0.46
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 262 DDPPEDCPSCQCGIARTRRRIVGG 333
D PPE C SC G+ RRR +GG
Sbjct: 200 DMPPERCRSCLDGVVAERRRKIGG 223
>02_05_0967 -
33148283-33148524,33148602-33148881,33148959-33149151,
33149244-33149324,33149395-33149520,33149758-33150137,
33150367-33150394,33150816-33150979,33151920-33152039,
33152168-33152416
Length = 620
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 127 VIMICLVGWSSCYTQRPIGQKDKGFIDW 210
+++I LV W CY P+ +K+K F+D+
Sbjct: 108 IVVIWLVNWQ-CYNIAPVAEKEKIFVDF 134
>10_01_0341 - 3758835-3759599,3760302-3760349
Length = 270
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = -3
Query: 521 LVSFTLERSCSKNRTVIRSLRNPEVQ*AAVKTYRSLISAPPQ*NLPPYKRAAIQGYSVSF 342
++ T+ ++ + RTV+R + + AAV+T + + PP N PP ++ SV
Sbjct: 80 MLEVTIPKNTNLRRTVVRIGQQSQSP-AAVRTAQPKVVDPPPANSPPKNNNLVRNTSVQS 138
Query: 341 VSYPP 327
PP
Sbjct: 139 RIDPP 143
>06_03_0223 -
18391177-18391287,18391570-18392081,18392200-18393019,
18393603-18393671,18393973-18394062,18395381-18395575
Length = 598
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/97 (21%), Positives = 39/97 (40%)
Frame = +3
Query: 99 YFVINNEMASDYDLPGWLVELLHPAAHRSEG*RIYRLDQQSPWRHNDYHDFKTYRRPARG 278
+F + E + + + W ++L P HR + + WR YH+ K Y+ +
Sbjct: 446 HFPVELEHRAHWAIRTWNMDLTGPGQHRK-----MQHSELEEWRDKAYHNAKIYKDRTKR 500
Query: 279 LPKLSMRHSTHSSAHRGRI*NERDGVPLDGRSFVRRK 389
++H + + + N R V L G +R K
Sbjct: 501 WHDKRIKHKEFKAGDKVLLFNSR--VKLFGHGKLRSK 535
>08_02_1096 - 24280910-24281195,24281326-24281711
Length = 223
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 341 RKRRSTPGWPLFCTAEDSIVVVHLSVIC 424
R+RR+ PG PL+ D + V S+IC
Sbjct: 196 RRRRNVPGEPLYLWRADELHVYVRSIIC 223
>07_03_0716 +
20905041-20905851,20906644-20906825,20907117-20907330,
20907416-20907653,20907905-20908058,20908190-20908461,
20908703-20908808
Length = 658
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 268 PPEDCPSCQCGIARTRRRIVGG 333
PPE+C SC GI +++VGG
Sbjct: 214 PPENCRSCLDGIIDEGKKMVGG 235
>02_05_0958 +
33073302-33073442,33073839-33073913,33074382-33074497,
33076863-33076977,33077100-33077228,33078907-33078954,
33079343-33079469,33079634-33079789,33080031-33080287,
33080431-33080580,33080660-33080714,33080793-33081088,
33081252-33081335,33081869-33081941,33082164-33082291,
33082905-33083090,33083179-33083316,33083394-33083519,
33083705-33083965
Length = 886
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 472 ITVRFLEHDRSKVNETKTIDRKVSDIIRHLRYNPGTYDSDI 594
+T R EH SK + + +SD++RHL N SD+
Sbjct: 324 VTTRLAEH--SKAQSSTALMAAISDMVRHLSKNMQLLVSDV 362
>11_04_0460 -
17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 600 KGDITVVSSGIIPQMTNDVRHLSVYRFSFV 511
K T S +IPQM + + HL Y F+F+
Sbjct: 418 KAKATEYSEPLIPQMEDFLPHLQPYAFAFI 447
>04_04_0322 - 24374624-24377698
Length = 1024
Score = 27.5 bits (58), Expect = 9.8
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -3
Query: 533 LSIVLVSFTLERSCSKNRTVIRSLRNPEVQ*AAVKTYRSLISAPPQ*NLPPYK---RAAI 363
LS+ L + + CS N R L N + R L+ Q P Y R AI
Sbjct: 771 LSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAI 830
Query: 362 QGYSVSFVS 336
QG+S SF++
Sbjct: 831 QGFSKSFIA 839
>04_04_0298 +
24228569-24228763,24229792-24229900,24230001-24230069,
24230159-24230262,24230361-24230490,24231270-24231374,
24231479-24231689,24231917-24231927,24232331-24232341,
24233863-24233979,24234376-24234441,24234728-24234790,
24236577-24236652,24238003-24238064,24238573-24238658,
24238978-24239026,24239099-24239279,24239448-24239596,
24239682-24239750,24240920-24240991,24241122-24241269,
24241403-24241498,24242024-24242094,24242223-24242338,
24242453-24242498,24242611-24242781
Length = 860
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 529 DRKVSDIIRHLRYNPGTYDSDIALLKLAERV 621
+ +SD ++H++Y G+YDS KL + +
Sbjct: 479 EEHLSDFLQHIKYVSGSYDSGEGFEKLNKEI 509
>03_02_0411 + 8217324-8218172
Length = 282
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 400 HNRIFRRTKERPSRGTPSLSFHIRP 326
H FRRT+ERP RG F P
Sbjct: 36 HRPRFRRTRERPRRGGGDRQFRAAP 60
>02_04_0193 -
20801959-20802583,20803372-20803448,20803530-20803646,
20804147-20804250,20804359-20804428,20804547-20804644,
20804747-20804840,20805269-20805359,20805453-20805545,
20805635-20805960,20806162-20806641
Length = 724
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 399 TIESSAVQKS-GHPGVLRLFRFISAHDAPTSACYAALTAW 283
T + A++++ G P V+++ F A A T AC L W
Sbjct: 515 TARNDAMRRAAGQPDVIKIETFYHADKAKTEACILDLVLW 554
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,307,395
Number of Sequences: 37544
Number of extensions: 388907
Number of successful extensions: 938
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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