Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0779
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden...    29   2.7  
At5g61820.1 68418.m07757 expressed protein MtN19, Medicago trunc...    28   4.7  
At1g08840.1 68414.m00984 DNA replication helicase, putative simi...    28   4.7  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   6.2  
At1g55280.1 68414.m06315 expressed protein                             27   8.2  

>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) identical
            to HAC5 (GI:21105780) [Arabidopsis thaliana]; similar to
            CREB-binding protein GB:S39162 from [Homo sapiens]
          Length = 1670

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 441  SSCQNVQITDKCTTTIESSAVQKSGHP 361
            + C+N QI DKC   +E + V+K  HP
Sbjct: 1400 NQCKNFQICDKC-HEVEENRVEKEKHP 1425


>At5g61820.1 68418.m07757 expressed protein MtN19, Medicago
           truncatula, EMBL:MTY15367
          Length = 475

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 444 MSSC---QNVQITDKCTTTIESSAVQKSGHPGVLRLFRFISAHDAP 316
           MSSC     V+++   T T+ES+     GH GV+ LF  + A   P
Sbjct: 374 MSSCYPADPVKVSYGETLTLESNYSNAVGHTGVMGLFYILVAQQLP 419


>At1g08840.1 68414.m00984 DNA replication helicase, putative similar
            to helicase [Xenopus laevis] gi|18845092|gb|AAL79550
          Length = 1296

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = +1

Query: 370  ALLYGGRFYCGGALISD-LYVLTAAHCTSGFRKERI----TVRFLEHDRSKVNETK 522
            AL+YG R  CG A ++D   VL+ +  TS + K+ +    TV F+  D  +  E +
Sbjct: 1098 ALIYGDRLCCGSAEVADATLVLSTSSSTSPWLKKVLEPTRTVVFVNTDMLRAFEAR 1153


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
           (MIDAS-containing protein) (Swiss-Prot:Q12019)
           [Saccharomyces cerevisiae]; similar to Midasin
           (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
           sapiens]; contains Prosite PS00017: ATP/GTP-binding site
           motif A (P-loop)
          Length = 5336

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 493 HDRSKVNETKTIDRKVSDIIRHLRYN 570
           HDRS+  ET+T  R +  I R + YN
Sbjct: 642 HDRSRFVETRTSTRLLEKIARSVEYN 667


>At1g55280.1 68414.m06315 expressed protein
          Length = 390

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 228 RHNDYHDFKTYRRPARGLP 284
           + +DY DF++Y RP R LP
Sbjct: 45  KSSDYQDFQSYARPLRLLP 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,267,673
Number of Sequences: 28952
Number of extensions: 298373
Number of successful extensions: 791
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)