Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0777
(828 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.5
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 27 3.2
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 4.3
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.5
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 26 7.5
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 26 7.5
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 9.9
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 25 9.9
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p... 25 9.9
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.9
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.5
Identities = 21/68 (30%), Positives = 37/68 (54%)
Frame = -3
Query: 721 AAAATVPSSLTSIFALCIASSNRMPCCSVNVLKSAVPLNRSPTPSFSRISLSGSDLSMEN 542
+++++ SSL+S + ASS+ S +++ S+ + SPT + S IS S S S
Sbjct: 245 SSSSSTSSSLSSSSSSSTASSS---SSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPT 301
Query: 541 LGISTMTS 518
ST++S
Sbjct: 302 STSSTISS 309
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 534 IPKFSMERSLPLREILEKLGV 596
+ K+ +E LP+R IL+KLG+
Sbjct: 88 LEKYLIEEELPVRSILKKLGI 108
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 26.6 bits (56), Expect = 4.3
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = -2
Query: 338 ESSFLFHERNKSLSGFRNEESFFSCSLGREFRRPNTFKVSSVGQDESSSLRYPRGGN 168
+ + R K++ RNEE + S R ++ K+SS + S ++ R N
Sbjct: 509 QQQIMLEARQKAIERRRNEEEELARSRERARKKAEEIKISSSKMNSSPTITNERSSN 565
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 25.8 bits (54), Expect = 7.5
Identities = 8/25 (32%), Positives = 19/25 (76%)
Frame = +1
Query: 553 RGRYHLEKSWKNLGSEICSMEQLTS 627
+G YHL++ + + SE+ +++QL++
Sbjct: 2542 KGNYHLKEHEREVSSELLNLQQLSA 2566
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 333 TFHYMVSDELGAQILELPYKGSDISMYILLPPYSMKEGVSNII 461
T + + + G IL + + + IS YIL P + + + NI+
Sbjct: 301 TVNQIFGESTGISILPMTFDWNQISAYILSPLMAPADALMNIL 343
>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 288
Score = 25.8 bits (54), Expect = 7.5
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 649 AFCSMMLYIKQRLTLTKKVLWQQLRPPSSGSVRLDLQNRPASLPTSLSYTF 801
AF ++ + LT VL+QQL S+ + ++ +SLP L F
Sbjct: 80 AFVNVSITSPTLLTSVDPVLYQQLEASSTNDISTVFEDESSSLPIILHPKF 130
>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 9.9
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 677 FMYSIIEQNAVLLC-QRTEVSCSIEQISDPKF 585
F+YSI +Q + +C Q + S IE + P F
Sbjct: 109 FIYSIFKQTGIWICKQVADESSLIEMLKKPVF 140
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 25.4 bits (53), Expect = 9.9
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +3
Query: 81 LNFRENPGAARDYINSWVSRVTKNHISDLIPASGISQTTRLVLANAAYFKGVWASKFPA 257
L NP +ARD++NSW + L A+G+S+ +++A+ A V +S + A
Sbjct: 387 LKLGANP-SARDFLNSWTPLM-------LASATGLSEIVSILVASGASVDEVDSSGWTA 437
>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 216
Score = 25.4 bits (53), Expect = 9.9
Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +3
Query: 555 RSLPLREILEKLGVGDLFNGTADFSTLTEQHGI--LFDDAIHKAKIDVNEEGTVAAAATA 728
RS+P+ L LG+ L TA + +G+ + +++ A + ++ V A
Sbjct: 7 RSIPITARLPSLGIRSLATATASAHPPVQLYGLDGSYASSLYTAAVKESKLDNVEKALNK 66
Query: 729 IFGFRSSRP 755
+ G RP
Sbjct: 67 LSGVLQQRP 75
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 9.9
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = -3
Query: 670 IASSNRMPCCSVNVLKSAVPLNRSPTPSFSRISLSGSDLSMENLGISTMTSLPI*LSSTT 491
I++S + P SV +VP + S P S S S S +ST + + +SST
Sbjct: 452 ISTSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSSTL 511
Query: 490 AARRSGV 470
+ S +
Sbjct: 512 LSGSSAI 518
Score = 25.4 bits (53), Expect = 9.9
Identities = 29/92 (31%), Positives = 40/92 (43%)
Frame = -3
Query: 622 SAVPLNRSPTPSFSRISLSGSDLSMENLGISTMTSLPI*LSSTTAARRSGVKLAIILLTP 443
SA+P S TPS S IS + + + I T +S S TT + SG+ + I P
Sbjct: 516 SAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTIS--SGISSSSI---P 570
Query: 442 SFIE*GGSRMYMLMSLPLYGSSKICAPSSSLT 347
S S + S P S I + S+S T
Sbjct: 571 STFSSVSSILSSSTSSPSSTSLSISSSSTSST 602
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,588,950
Number of Sequences: 5004
Number of extensions: 77905
Number of successful extensions: 238
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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