Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0775
(809 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33320.1 68415.m04084 C2 domain-containing protein low simila... 37 0.018
At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains P... 32 0.52
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB) 31 0.68
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 31 0.68
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 31 0.68
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH... 31 0.90
At1g44010.1 68414.m05077 hypothetical protein 31 0.90
At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi... 30 1.6
At1g55640.1 68414.m06369 prenylated rab acceptor (PRA1) family p... 30 1.6
At1g32380.1 68414.m03995 ribose-phosphate pyrophosphokinase 2 / ... 29 2.8
At5g61920.1 68418.m07773 hypothetical protein 29 3.7
At1g69200.1 68414.m07921 pfkB-type carbohydrate kinase family pr... 29 3.7
At5g32440.1 68418.m03825 expressed protein 29 4.8
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 29 4.8
At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -relat... 29 4.8
At4g34390.1 68417.m04885 extra-large guanine nucleotide binding ... 28 6.4
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 28 6.4
At1g31440.1 68414.m03850 SH3 domain-containing protein 1 (SH3P1)... 28 6.4
At5g50780.1 68418.m06291 ATP-binding region, ATPase-like domain-... 28 8.4
At4g23950.1 68417.m03444 expressed protein ; expression supporte... 28 8.4
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 28 8.4
At4g14120.1 68417.m02179 expressed protein 28 8.4
At2g30120.1 68415.m03666 expressed protein 28 8.4
At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger) fa... 28 8.4
>At2g33320.1 68415.m04084 C2 domain-containing protein low
similarity to splicing coactivator subunit SRm300 [Homo
sapiens] GI:6649242; contains Pfam profile PF00168: C2
domain
Length = 602
Score = 36.7 bits (81), Expect = 0.018
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Frame = +3
Query: 255 NHNVVKAR--KQENSDFILHPDPSWNQRKRPIPRNLKKISPVPEPRSNY-TPARKISPIQ 425
NHNV++ R +Q DFI N R R PR + P P +Y + + SP
Sbjct: 301 NHNVLRPRSERQHEPDFIDQSPFRSNDRSRKTPRRSTPMIEKPRPPRDYDRTSSRASPYL 360
Query: 426 NLNKSPVKGN---QEPVRNGVVKTKKPLKKS 509
+ + +P++ N P+R+ +V + P++ +
Sbjct: 361 SRHGTPLRSNIVASTPIRSNMV-SSSPMRST 390
>At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains Pfam
profile PF01189: NOL1/NOP2/sun family
Length = 783
Score = 31.9 bits (69), Expect = 0.52
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +3
Query: 354 LKKISPVPEPRSNYTPARKISPIQNLNKSPVKGNQEPVRNGVVKTKKPLKKSNQYTLD 527
L K+SP+P+ + T R +S N+N S + E V + VV KP + + + L+
Sbjct: 461 LHKVSPLPDFQEKVTQKRNLSTRNNINSSEKSSSYEAVSDTVV--TKPEEGTEEIVLE 516
>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
Length = 262
Score = 31.5 bits (68), Expect = 0.68
Identities = 24/92 (26%), Positives = 42/92 (45%)
Frame = +3
Query: 423 QNLNKSPVKGNQEPVRNGVVKTKKPLKKSNQYTLDNCPDTLVCDTKGSNTDHFGLRQRRH 602
+ ++K G ++ V K +K +T N TLV T+G+ GL+ R
Sbjct: 7 KRISKGRKGGKKKAVDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVF 66
Query: 603 SLPVDLEIVSDEEWTYRMQNLEVENVMLKNEL 698
+ + ++ +DE+ YR L E+V +N L
Sbjct: 67 EVSL-ADLQNDEDNAYRKIRLRAEDVQGRNVL 97
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 31.5 bits (68), Expect = 0.68
Identities = 18/74 (24%), Positives = 33/74 (44%)
Frame = +3
Query: 228 DEQTGAALRNHNVVKARKQENSDFILHPDPSWNQRKRPIPRNLKKISPVPEPRSNYTPAR 407
D G+ R R++ + D+ P +++ K P P +K S+Y AR
Sbjct: 147 DRYAGSRRRRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYERRKSPDYGRRSSDYGRAR 206
Query: 408 KISPIQNLNKSPVK 449
SP + ++SP++
Sbjct: 207 ARSPGYDRSRSPIQ 220
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 31.5 bits (68), Expect = 0.68
Identities = 18/74 (24%), Positives = 33/74 (44%)
Frame = +3
Query: 228 DEQTGAALRNHNVVKARKQENSDFILHPDPSWNQRKRPIPRNLKKISPVPEPRSNYTPAR 407
D G+ R R++ + D+ P +++ K P P +K S+Y AR
Sbjct: 173 DRYAGSRRRRSPSPVYRRRPSPDYTRRRSPEYDRYKGPAPYERRKSPDYGRRSSDYGRAR 232
Query: 408 KISPIQNLNKSPVK 449
SP + ++SP++
Sbjct: 233 ARSPGYDRSRSPIQ 246
>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
(MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
thaliana}
Length = 1324
Score = 31.1 bits (67), Expect = 0.90
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = +3
Query: 309 PDPSWNQRKRPIPRNLKKISPVPEPR-SNYTPARKISPIQNL---NKSPVKGNQEPVRNG 476
P PS + +K P N SP P P TP +P NL + SP PV++
Sbjct: 39 PSPSLSNKKTPKSNNPNPKSPSPSPSPPKKTPKLNPNPSSNLPARSPSPGPDTPSPVQS- 97
Query: 477 VVKTKKPL 500
K KKPL
Sbjct: 98 --KFKKPL 103
>At1g44010.1 68414.m05077 hypothetical protein
Length = 227
Score = 31.1 bits (67), Expect = 0.90
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -3
Query: 369 VKFSLNFV-VLAFFFGSRKGLDVR*NRSFLVYVPSQHCDCVGLLLFARLN 223
++F LN V ++A F + D SFLV++ C CV +LL +N
Sbjct: 60 IEFVLNIVQIVAAFVVVTRAKDEHPGTSFLVWIIGYTCGCVAILLIQFIN 109
>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
to 40S ribosomal protein S3A (S phase specific protein
GBIS289) GB:P49396 [Brassica rapa]
Length = 262
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/92 (26%), Positives = 42/92 (45%)
Frame = +3
Query: 423 QNLNKSPVKGNQEPVRNGVVKTKKPLKKSNQYTLDNCPDTLVCDTKGSNTDHFGLRQRRH 602
+ ++K G ++ V K +K + +T N TLV T+G+ GL+ R
Sbjct: 7 KRISKGRKGGKKKAVDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVF 66
Query: 603 SLPVDLEIVSDEEWTYRMQNLEVENVMLKNEL 698
+ + ++ DE+ YR L E+V +N L
Sbjct: 67 EVSL-ADLQGDEDNAYRKIRLRAEDVQGRNVL 97
>At1g55640.1 68414.m06369 prenylated rab acceptor (PRA1) family
protein weak similarity to prenylated Rab acceptor 1
(PRA1) [Homo sapiens] GI:4877285; contains Pfam profile
PF03208: Prenylated rab acceptor (PRA1)
Length = 187
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 473 ISYWLLIAFYRRFIQILYRRNLSSRSVI 390
++ WLL+ FYR +LY R++S R ++
Sbjct: 100 VAMWLLLYFYRDHPLVLYGRHISDRVIV 127
>At1g32380.1 68414.m03995 ribose-phosphate pyrophosphokinase 2 /
phosphoribosyl diphosphate synthetase 2 (PRS2) identical
to SP:Q42583 from [Arabidopsis thaliana]; strong
similarity to phosphoribosyl diphosphate synthetase 1
(ribose-phosphate pyrophosphokinase 1 (PRS I)
[Arabidopsis thaliana] GI:633140, SP|Q42581
Length = 400
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 757 PSCVLRSFSSKSATSLFNTLSSFFNITFSTSKFCI 653
PS + S+ S S++SLF+ S F T S S+ C+
Sbjct: 10 PSVKIPSYLSSSSSSLFSRSSISFRTTESRSRICV 44
>At5g61920.1 68418.m07773 hypothetical protein
Length = 238
Score = 29.1 bits (62), Expect = 3.7
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Frame = +3
Query: 552 DTKGSNTDHFGLRQRRHSLPVDLE--IVSDEEWTYRMQN----LEVENVMLKNELNVLNR 713
DT S +D LR + SL LE I R+ N L V LK +L V +R
Sbjct: 31 DTISSTSDPRHLRDHQISLSDILENKIAVQAAEIDRLSNDNRKLASSYVALKEDLTVADR 90
Query: 714 EVADLLEKLRKTQDGNKVE 770
EV L +RKT+ ++++
Sbjct: 91 EVQGLRAHIRKTETDHEIQ 109
>At1g69200.1 68414.m07921 pfkB-type carbohydrate kinase family
protein contains Pfam profile: PF00294 pfkB family
carbohydrate kinase
Length = 614
Score = 29.1 bits (62), Expect = 3.7
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Frame = +3
Query: 429 LNKSPVKGNQEPVRNGVVKTKKPLKKSNQYTLDNCPDTLVCDTKGSNTDHFGLRQRRHSL 608
+ K P K + + VV +PL++ +++ +DN D L ++ S R R+ +
Sbjct: 69 VGKKPSKSVKRTTKKKVVVKDEPLEEISEFLVDN-DDVLDKESIVSALKPKKTRTRKKAA 127
Query: 609 PV--DLEIVSDEEWTYRMQNLEVENVMLKNELNVLNREVADLLEKL 740
D+E V E+ R + ++ + + + +++ EV+D+ E L
Sbjct: 128 AASSDVEEVKTEKKVRRKRTVKKDKDVEDDLATIMDAEVSDVEEAL 173
>At5g32440.1 68418.m03825 expressed protein
Length = 264
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 645 TYRMQNLEVENVMLKNELNVLNREVADLLEKLRKTQDGNKVE 770
T MQNL+ EN+MLK +L + +E LL++ TQ + E
Sbjct: 170 TDAMQNLQQENMMLKQQLEAIVQE-NSLLKRAVVTQQKRQRE 210
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +3
Query: 249 LRNHNVVKARKQENSDF---ILHPDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISP 419
LR++ + A ++ SD I+ PS ++ + P+ S PR + + + SP
Sbjct: 349 LRSNGISDAASEQISDRQPDIVDDHPSKSRSRSLSPKRTVSKSTSVSPRRSQSKSPSSSP 408
Query: 420 IQNLNKSPVKGNQEPVRN 473
N +SP KG+++ V+N
Sbjct: 409 RWNGGRSPAKGSRQ-VKN 425
>At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -related
similar to CLIP-associating protein CLASP2 (GI:13508651)
[Rattus norvegicus]
Length = 1439
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +3
Query: 606 LPVDLEIVSDEEWTYRMQNLEVENVMLKNELNVLNREVADLLEKL 740
L V LE++ DE+++ + L + + MLK++ + + V ++EKL
Sbjct: 1253 LTVVLEVLDDEDFSIKELALSLISEMLKSQKDAMEDSVEIVIEKL 1297
>At4g34390.1 68417.m04885 extra-large guanine nucleotide binding
protein, putative / G-protein, putative similar to
extra-large G-protein (XLG) [Arabidopsis thaliana]
GI:3201680; contains Pfam profile PF00503: G-protein
alpha subunit
Length = 861
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 447 KGNQEPVRNGVVKTKKPLKKSNQYTLDNCPD 539
K NQ P R ++ KPL + YTL CP+
Sbjct: 297 KANQLPSRL-IIVNDKPLSEDELYTLQTCPN 326
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +3
Query: 636 EEWTYRMQNLEVENVMLKNELNVLNREVADLLEKLRK 746
EE Q L+ EN +LK E NVL ++ +L KLR+
Sbjct: 2542 EEHRQYQQLLKKENELLKEENNVLKLQLDELNLKLRR 2578
>At1g31440.1 68414.m03850 SH3 domain-containing protein 1 (SH3P1)
nearly identical to SH3 domain-containing protein 1
[Arabidopsis thaliana] GI:16974676; contains Pfam
profile PF00018: SH3 domain
Length = 439
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 336 RPIPRNLKKISPVPEPRSNYTPARKISPIQNLNKS 440
+P P++ K SP E +SN+ K SP + + KS
Sbjct: 316 KPSPKDEMKSSPQEETKSNHQKEIKSSPQEEIKKS 350
>At5g50780.1 68418.m06291 ATP-binding region, ATPase-like
domain-containing protein low similarity to microrchidia
[Homo sapiens] GI:5410257; contains Pfam profile
PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
HSP90-like domain protein
Length = 823
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +3
Query: 309 PDPSWNQRKRPIPRNLKKISPVPEPRSNYTPARKISPIQNLNKSPVKGNQEPVRN-GVVK 485
P S + RKR +P + K + P + + K +P N+N KG+ + ++ G
Sbjct: 597 PKGSASSRKRTVPSSFKTPTAAPRFNTPTAASEKFNPRSNVNGGG-KGSVKVSKDIGYKS 655
Query: 486 TKKPLKKSNQYTLDN 530
++K K N ++ N
Sbjct: 656 SEKGGKLGNSFSKSN 670
>At4g23950.1 68417.m03444 expressed protein ; expression supported
by MPSS
Length = 466
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +3
Query: 390 NYTPARKISPIQNLNKSPVKGNQEPVRNGVVKTKKPLKKSNQYT-LDNCPDTLVCDTKGS 566
NY A K + + + NK + ++ + P S++Y ++ +TLV + +
Sbjct: 143 NYASAMKGAKVVDHNKEAKGASNVLGKDHDKYLRNPCSVSDKYVVIELAEETLVDTVRIA 202
Query: 567 NTDHFGLRQRRHSLPVDLEIVSDEEWT 647
N +H+ + SL L SD WT
Sbjct: 203 NFEHYSSNPKEFSLSGSLSFPSD-MWT 228
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 339 PIPRNLKKISPVPEPRSNYTPARKISPIQN 428
P P + SP+P P + TP ISP QN
Sbjct: 547 PSPSSPTPSSPIPSPPTPSTPPTPISPGQN 576
>At4g14120.1 68417.m02179 expressed protein
Length = 368
Score = 27.9 bits (59), Expect = 8.4
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = +3
Query: 549 CDTKGSNTDHFGLRQRRHSLPV---DLEIVSDEEWTYRMQNLEV-ENVMLKNELNVLNRE 716
CDT SN G + L DLE+V + T + E ++KNE +N+E
Sbjct: 116 CDTPNSNVMREGSKYLVDGLVATGGDLEVVECSQTTPPDLGMFTGELSLVKNEAGSINQE 175
Query: 717 VADLLEKLRKTQDGNKV 767
++++ K T G+KV
Sbjct: 176 ISEVSGKKVGTNLGSKV 192
>At2g30120.1 68415.m03666 expressed protein
Length = 176
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 657 QNLEVENVMLKNELNVLNREVADLLEKLRKTQ 752
Q L V ++ LK++LNV RE+ LLE K +
Sbjct: 58 QRLAVAHIGLKDQLNVAKRELERLLETAVKVK 89
>At1g57800.1 68414.m06558 zinc finger (C3HC4-type RING finger)
family protein contains zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 660
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 705 LNREVADLLEKLRKTQDGNKVEKVANGHAEFNS 803
+NREVA+++EKL+K ++ + + G S
Sbjct: 597 VNREVAEVIEKLKKQEEEENAKSLDEGQCSGTS 629
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,557,881
Number of Sequences: 28952
Number of extensions: 351784
Number of successful extensions: 1191
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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