BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0774 (805 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 105 7e-24 SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 32 0.083 SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 31 0.14 SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 29 0.58 SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 29 1.0 SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.1 SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 27 4.1 SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub... 27 4.1 SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 26 5.5 SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 7.2 SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po... 26 7.2 SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 7.2 SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 25 9.5 >SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 240 Score = 105 bits (252), Expect = 7e-24 Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 3/192 (1%) Frame = +3 Query: 150 MGCDGGTIPRRDELVRMKKKPEQKDKDAERSFK---WRNCALSQQILQEPIVACSLGRLY 320 MG DGG++P R+ELV+ K D D +RS K + CA++ + L PIV+C LG+LY Sbjct: 1 MGNDGGSLPTRNELVKEPGKVPPLDIDFKRSVKSSQFSQCAITDEPLYPPIVSCGLGKLY 60 Query: 321 SKSSVLEALLDKETRPESINHXXXXXXXXXXXXXXXPAYVPTDHTDGTFDNGSAPYICPI 500 +K+S+L+ LLD+ + P+S +H V D D+G ++CPI Sbjct: 61 NKASILQMLLDRSSVPKSPSH-------IKSLKDVVQLQVELD------DSGKVLWLCPI 107 Query: 501 SGLEMTGKFRFVFLWSCGCVLAERALKEVRQNLCHMCQQPFTDNDIVVLNGTEEDIEKLK 680 + M+ ++F ++ CG V ALK+ + +C C Q + + D++ +N E ++ L Sbjct: 108 TRHVMSDTYQFAYIVPCGHVFEYSALKQFGEKMCFQCNQVYEEKDVIPINPNAEQLKTLS 167 Query: 681 DKMAIRVSNRKT 716 ++ + KT Sbjct: 168 KRLLDLALSEKT 179 >SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1133 Score = 32.3 bits (70), Expect = 0.083 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%) Frame = +3 Query: 549 CGCVLAERALKEVRQN----LCHMCQQPFTDNDI 638 CG L+E + R+N LCH C+QPF + D+ Sbjct: 898 CGDCLSEHIQYQKRRNIIPPLCHTCRQPFNEQDV 931 >SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 250 Score = 31.5 bits (68), Expect = 0.14 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 2/75 (2%) Frame = +3 Query: 129 KTHIFHKMGCDGGTIPRRDELVRMKKKPEQK-DKDAERSFKWRN-CALSQQILQEPIVAC 302 K I+H+ DG P + EQ+ D+ S + N C L+ Q + PI++ Sbjct: 134 KKTIWHEQNTDGSDFPSMKTFFNVMNTEEQEADEVMVYSATFDNRCPLTLQPIVHPILST 193 Query: 303 SLGRLYSKSSVLEAL 347 + Y K ++L L Sbjct: 194 ACNHFYEKDAILSLL 208 >SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 474 Score = 29.5 bits (63), Expect = 0.58 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = +3 Query: 624 TDNDIVVLNGTEEDIEKLKDKMAIRVSNRKTLKRTRQRNWKSP*LKLKSIQ 776 T + + +G + +E LK+ + +S KRT Q W+ P L L I+ Sbjct: 269 TPTEDSIYDGIDYTMEDLKEAVGADISIYPDPKRTLQHRWRYPTLSLHGIE 319 >SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosaccharomyces pombe|chr 1|||Manual Length = 636 Score = 28.7 bits (61), Expect = 1.0 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 474 GSAPYICPISGLEMTGKFRFVFLWSCGCV 560 GSAPYI P E R V +W+CG + Sbjct: 522 GSAPYIAPEEYTESEFDPRAVDVWACGVI 550 >SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual Length = 188 Score = 27.1 bits (57), Expect = 3.1 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = -2 Query: 255 YAT*NFFQHLYLSVLASFSFERAHRVEELYRHHNPFCEKYVFFHYFF 115 +AT + F L+ L S F R ++ Y HH+ F + F+ +FF Sbjct: 37 FATLHAFVFLFSHTLVSSQFRR---LKLPYHHHHTFTIEAFFYWFFF 80 >SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosaccharomyces pombe|chr 2|||Manual Length = 269 Score = 26.6 bits (56), Expect = 4.1 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = -1 Query: 634 SLSVNGC*HIWHRFCRTSFSALSASTQ--PQLQRKTKRNFPVISKPLIG 494 +LS C HI+ FC S +A+TQ P +RK N + + ++G Sbjct: 215 NLSCTPCGHIFCNFCILSALGTTAATQKCPVCRRKVHPNKVICLEMMLG 263 >SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual Length = 490 Score = 26.6 bits (56), Expect = 4.1 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = +3 Query: 627 DNDIVVLNGTEEDIEKLKDKM 689 D + ++ G EED +KLKDK+ Sbjct: 274 DEEAPIMEGNEEDNKKLKDKI 294 >SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schizosaccharomyces pombe|chr 1|||Manual Length = 690 Score = 26.2 bits (55), Expect = 5.5 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 9/65 (13%) Frame = +3 Query: 540 LWSCGCVLAE----RALKEVRQNLCHMCQQ-----PFTDNDIVVLNGTEEDIEKLKDKMA 692 +WS GC+L E +AL + ++ H+C PF N I + T + K K+ Sbjct: 562 VWSIGCILVELFTGQALFQTHEDSEHLCMMEKILGPFDRNMISRSSRTSQRFFKSDGKVR 621 Query: 693 IRVSN 707 +SN Sbjct: 622 YPLSN 626 >SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr 1|||Manual Length = 1822 Score = 25.8 bits (54), Expect = 7.2 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = -2 Query: 318 KVFQDCMPLLVLVVFAARAH-NYAT*NFFQHLYLSVL 211 +VF+ C + L+VF+ RAH FF+ +Y +L Sbjct: 478 QVFEVCCDIFYLMVFSLRAHFKQEIEVFFREVYFPML 514 >SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces pombe|chr 2|||Manual Length = 447 Score = 25.8 bits (54), Expect = 7.2 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -2 Query: 231 HLYLSVLASFSFERAHRVEELYRHHNPFCE 142 +L +V +F F+ A V L RHH CE Sbjct: 155 NLQQAVPITFGFKMARFVATLRRHHQRLCE 184 >SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 1201 Score = 25.8 bits (54), Expect = 7.2 Identities = 10/35 (28%), Positives = 23/35 (65%) Frame = +3 Query: 669 EKLKDKMAIRVSNRKTLKRTRQRNWKSP*LKLKSI 773 +K+K+K+ +++S+ + R+R + +K P + L I Sbjct: 896 KKIKNKIQVKLSSILEMLRSRYKKFKKPIIDLNDI 930 >SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1150 Score = 25.4 bits (53), Expect = 9.5 Identities = 7/13 (53%), Positives = 12/13 (92%) Frame = -3 Query: 692 CHLVFQFFNVFLC 654 CH++++F+NV LC Sbjct: 267 CHMIYKFWNVKLC 279 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,362,841 Number of Sequences: 5004 Number of extensions: 70852 Number of successful extensions: 244 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 229 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 243 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 390427050 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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