Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0774
         (805 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58020.1 68418.m07260 expressed protein contains PF04641: Pro...   118   6e-27
At1g61620.1 68414.m06943 expressed protein contains Pfam profile...    34   0.096
At5g18340.1 68418.m02158 U-box domain-containing protein weak si...    31   0.68 
At4g27595.1 68417.m03964 protein transport protein-related low s...    31   0.68 
At2g04620.1 68415.m00470 cation efflux family protein potential ...    31   0.68 
At3g46600.2 68416.m05059 scarecrow transcription factor family p...    30   1.6  
At3g46600.1 68416.m05058 scarecrow transcription factor family p...    30   1.6  
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea...    29   2.7  
At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger) fa...    29   3.6  
At1g54540.1 68414.m06220 hypothetical protein                          29   3.6  
At3g27860.1 68416.m03474 PWWP domain-containing protein                29   4.8  
At1g75150.1 68414.m08729 expressed protein ; expression supporte...    29   4.8  
At5g07080.1 68418.m00802 transferase family protein similar to 1...    28   8.3  

>At5g58020.1 68418.m07260 expressed protein contains PF04641:
           Protein of unknown function, DUF602
          Length = 354

 Score =  118 bits (283), Expect = 6e-27
 Identities = 68/184 (36%), Positives = 103/184 (55%), Gaps = 5/184 (2%)
 Frame = +3

Query: 153 GCDGGTI--PRRDELVRM--KKKPEQKDKDAERSFKWRNCALSQQILQEPIVACSLGRLY 320
           G DGG      RD  + M  +KKP++ D + +R  KW NCALS + L EP V   LG L+
Sbjct: 85  GGDGGATGAESRDCYLNMYAEKKPDKVDPNEQRLSKWLNCALSNEPLAEPCVIDLLGNLF 144

Query: 321 SKSSVLEALLDKETRPESINHXXXXXXXXXXXXXXXPAYVPTDHTDGTF-DNGSAPYICP 497
           +K  ++ ALL K   P+  ++                   P   +DG+  D  SA + CP
Sbjct: 145 NKEVLVHALLSKRL-PKQFSYIKGLKDMVNIKL------TPVAGSDGSSQDTTSAQFQCP 197

Query: 498 ISGLEMTGKFRFVFLWSCGCVLAERALKEVRQNLCHMCQQPFTDNDIVVLNGTEEDIEKL 677
           +SGLE  GK++F  L  CG V++ +ALKEV+ + C +C     D+D +V+NGTEE+++ L
Sbjct: 198 VSGLEFNGKYKFFALRGCGHVMSAKALKEVKSSSCLVCHADVKDSDKIVINGTEEEVDLL 257

Query: 678 KDKM 689
           +++M
Sbjct: 258 RERM 261


>At1g61620.1 68414.m06943 expressed protein contains Pfam profile:
           PF01363 FYVE zinc finger
          Length = 310

 Score = 34.3 bits (75), Expect = 0.096
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 486 YICPISGLEMTGKFRFVFLWSCGCVLAERALKEVR--QNLCHMCQQPFTDNDIVVL 647
           YICP   + +T     V L SCG V  ++  ++      +C +C +P  D ++V L
Sbjct: 219 YICPSCKVTLTNTMSLVALSSCGHVFCKKCAEKFMPVDKVCLVCDKPCKDRNLVGL 274


>At5g18340.1 68418.m02158 U-box domain-containing protein weak
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 456

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +3

Query: 171 IPRRDELVRMKKKPEQKDKDAERSFKWRNCALSQQILQEPIVACSLGRLYSKSSVLEALL 350
           I  R ++V  KK+  + D  +    K   C LS+ I+ +P++  S G+ Y K  + E L 
Sbjct: 51  ILNRLKIVESKKRKRESDSSSVEVPKEFKCTLSKTIMIDPVIIFS-GQTYEKRYITEWLN 109

Query: 351 DKETRP 368
              T P
Sbjct: 110 HDLTCP 115


>At4g27595.1 68417.m03964 protein transport protein-related low
           similarity to SP|P25386 Intracellular protein transport
           protein USO1 {Saccharomyces cerevisiae}
          Length = 1212

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
 Frame = +3

Query: 186 ELVRMKKKPEQKDKDA--ERSFKWRNCALSQQILQEPIVACSLGRLYSKSSVLEALLDKE 359
           E+V + K    K K++  E+  + +N A   + L+E  V+ S+ ++   S V E+L+DKE
Sbjct: 602 EIVEVAKADSMKLKESLVEKEDELKNTAAENRKLREMEVS-SIDKIDQLSKVKESLVDKE 660

Query: 360 TRPESI 377
           T+ ++I
Sbjct: 661 TKLQNI 666


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 570 SQQAHSHSSREKQNEIFQSSPSH**GRCKEHSHYQMSHQY 451
           +++ H HS   K  E  Q S SH      EH H+  SH +
Sbjct: 567 NEEHHQHSDSHKHEEHHQHSDSHKHEEHHEHDHHHHSHSH 606


>At3g46600.2 68416.m05059 scarecrow transcription factor family
           protein scarecrow-like 11 - Arabidopsis thaliana,
           EMBL:AF036307
          Length = 453

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -2

Query: 213 LASFSFERAHRVEELYRHHNPFCEKY-VFFHYFFI-QDKTNVVLFLP*IFTTVHKVVFCI 40
           L    F  + RVEE  R    FC+K+ V F Y FI ++  N+ L    I +    VV CI
Sbjct: 223 LPQSGFRPSERVEETGRRLKRFCDKFNVPFEYSFIAKNWENITLDDLVINSGETTVVNCI 282

Query: 39  RRSQLT 22
            R Q T
Sbjct: 283 LRLQYT 288


>At3g46600.1 68416.m05058 scarecrow transcription factor family
           protein scarecrow-like 11 - Arabidopsis thaliana,
           EMBL:AF036307
          Length = 583

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -2

Query: 213 LASFSFERAHRVEELYRHHNPFCEKY-VFFHYFFI-QDKTNVVLFLP*IFTTVHKVVFCI 40
           L    F  + RVEE  R    FC+K+ V F Y FI ++  N+ L    I +    VV CI
Sbjct: 353 LPQSGFRPSERVEETGRRLKRFCDKFNVPFEYSFIAKNWENITLDDLVINSGETTVVNCI 412

Query: 39  RRSQLT 22
            R Q T
Sbjct: 413 LRLQYT 418


>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to cell cycle control protein cwf8 (SP:O14011)
           [Schizosaccharomyces pombe (Fission yeast)]
          Length = 523

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 255 NCALSQQILQEPIVACSLGRLYSKSSVLEALLD 353
           NCA+S ++ +EP+V+   G LY K  +   + D
Sbjct: 2   NCAISGEVPEEPVVSKKSGLLYEKRLIQTHISD 34


>At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger)
           family protein contains a Prosite:PS00518 Zinc finger,
           C3HC4 type (RING finger), signature and Pfam domain
           PF01485: IBR domain
          Length = 532

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 292 IGSCSICCESAQLRHLKLLSASLSFCS 212
           I +CSICCE  Q   +  L  +  FCS
Sbjct: 204 IENCSICCEDRQSEMMLSLKCTHKFCS 230


>At1g54540.1 68414.m06220 hypothetical protein
          Length = 239

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 357 PCQVVPQE-RNFCCKVFQDCMPLLVLVVFA 271
           P  V+P + RN CCK+F   + LLV+ + A
Sbjct: 38  PPPVIPSKNRNMCCKIFCWVLSLLVIALIA 67


>At3g27860.1 68416.m03474 PWWP domain-containing protein 
          Length = 652

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 117 RNSEKTHIFHKMGCDGGTIPRRDELVRMKKKPEQKDKDAERSFKWRNCA 263
           RN     ++ K G  G T+P +D+L++  +K    DK+    F   +C+
Sbjct: 505 RNEPGVELYIKTGF-GSTLPSKDDLIKTYEKFGALDKERSYMFNNNSCS 552


>At1g75150.1 68414.m08729 expressed protein ; expression supported
           by MPSS
          Length = 753

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
 Frame = +3

Query: 183 DELVRMKKKPEQKDKDAERSFKWRNCALSQQILQEPIVACS--LGRLYSKSSVLE 341
           +E++R  KKPE K K    SFK R  AL  +I + P  + S  LGRL +KSS+ E
Sbjct: 600 EEILRHIKKPEIKKKAKPSSFKER--AL-MEINKNPAASKSSFLGRL-TKSSISE 650


>At5g07080.1 68418.m00802 transferase family protein similar to
           10-deacetylbaccatin III-10-O-acetyl transferase - Taxus
           cuspidata, AF193765, EMBL:AF193765; contains Pfam
           transferase family domain PF00248
          Length = 450

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/28 (53%), Positives = 21/28 (75%), Gaps = 3/28 (10%)
 Frame = +3

Query: 618 PFT-DNDIV--VLNGTEEDIEKLKDKMA 692
           P+T  ND+V  +LN T EDI +LK+K+A
Sbjct: 238 PYTPSNDMVCEILNVTSEDITQLKEKVA 265


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,171,739
Number of Sequences: 28952
Number of extensions: 353455
Number of successful extensions: 1242
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)