BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0772 (753 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo... 42 1e-04 SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 31 0.23 SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 5.0 SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 26 6.6 SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 8.8 SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 25 8.8 >SPBC2A9.06c |||di-trans, poly-cis-decaprenylcistransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 258 Score = 41.5 bits (93), Expect = 1e-04 Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 11/170 (6%) Frame = +2 Query: 263 LIVKHIPKLSKQPKHLVVL----SDSDYHS-IDDLARMVIWSLVAGIPFLSFYDVSGQLS 427 LI + KL K+PKH+ V+ D I D + W + + I L+ Y+ G L Sbjct: 48 LIRRDTKKLKKKPKHIAVIIECVEDGGIEGLIHDACELSAWCVCSNIRELTIYERKGFLK 107 Query: 428 YQEEKLFNAVEKNKK---GVPGCIKWSKKPDLNGYTNGIPAHKIVVNIFSCQNGRSTI-- 592 E + A+ + G C P N + V++ + ++GR I Sbjct: 108 QSPEAVEKAIYSHLPFYLGGDKCTVHVTNPCSPDEKNQNDCVDLKVHLIAKEDGRDAIID 167 Query: 593 -TQCIKEMCEEKIPYNRKSDQITAQEFDDVISAVYPSIPDPDLALFSGPV 739 T+ + ++C +K+ S Q+T + D + IP+PDL + P+ Sbjct: 168 LTRGLADLCTKKV---ISSTQVTLELIDKELKE--SVIPEPDLLIIFAPL 212 >SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5 Taf72|Schizosaccharomyces pombe|chr 3|||Manual Length = 643 Score = 30.7 bits (66), Expect = 0.23 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 7/70 (10%) Frame = -2 Query: 590 LWNVRSDKKKYSQQFYVQE----CHLYTHSNQVSLTILYTPEH---LSCSSQLH*KVFLL 432 LW++++DKK + V++ L +HS V T ++P++ LSCS +++ + Sbjct: 350 LWSIKADKKSLPKSTSVEDSDGSVRLLSHSGPVYGT-TFSPDNKYLLSCSEDASARLWSV 408 Query: 431 DMKVDLIHHK 402 D K L+ +K Sbjct: 409 DTKTALVAYK 418 >SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1935 Score = 26.2 bits (55), Expect = 5.0 Identities = 9/19 (47%), Positives = 11/19 (57%) Frame = -1 Query: 528 FVYPFKSGFFDHFIHPGTP 472 FV K F+ HF+H G P Sbjct: 1511 FVQDIKKSFYKHFLHSGFP 1529 >SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces pombe|chr 3|||Manual Length = 1010 Score = 25.8 bits (54), Expect = 6.6 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +2 Query: 221 HSLQDYEVTKTDLKLIVKHIPKLSKQPKHLVVLSDS 328 H + T + L+ + ++IP +SKQP +L + S S Sbjct: 537 HKSTNSSATFSRLEELGENIPAISKQPSYLSISSSS 572 >SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 557 Score = 25.4 bits (53), Expect = 8.8 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%) Frame = +2 Query: 662 QEFDDVISAVYPSIPDP----DLALFSGPVCCT 748 Q +D + AVYP +P P D+ + S P T Sbjct: 469 QNYDSTVPAVYPYMPPPFSGSDMNVMSNPAADT 501 >SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|Schizosaccharomyces pombe|chr 1|||Manual Length = 693 Score = 25.4 bits (53), Expect = 8.8 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%) Frame = +2 Query: 503 KPDLNGYTNGIPAHKIVVNIFSCQNGRSTITQCIKEMCEE---KIPY-NRKSDQITAQEF 670 +P LNG + IPA V + + G+STI + + + KI N++ DQIT Sbjct: 456 RPILNGCSFNIPAGAKVAFVGASGCGKSTILRLLFRFYDTDSGKILIDNQRLDQITLNSL 515 Query: 671 DDVISAVYPSIP 706 I V P Sbjct: 516 RKAIGVVPQDTP 527 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,006,263 Number of Sequences: 5004 Number of extensions: 62555 Number of successful extensions: 170 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 165 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 170 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 359287726 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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