Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0772
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11509| Best HMM Match : Ycf9 (HMM E-Value=1.4)                      50   2e-06
SB_31433| Best HMM Match : Prenyltransf (HMM E-Value=0.25)             42   5e-04
SB_15229| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.14 
SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5)                    34   0.14 
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)                     30   1.8  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_42675| Best HMM Match : TFIIS_C (HMM E-Value=0.63)                  29   3.1  
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)                    29   5.4  
SB_4958| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.4  
SB_35016| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8)             29   5.4  
SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)                    29   5.4  
SB_45783| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_6034| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.4  

>SB_11509| Best HMM Match : Ycf9 (HMM E-Value=1.4)
          Length = 308

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 4/155 (2%)
 Frame = +2

Query: 254 DLKLIVKHIPKLSKQPKHLVVLSDSDYHSIDDLARMVIWSLVAGIPFLSFYDVSGQLSYQ 433
           +LK I  H   L   P H+ ++      S  D+A++V+W +  GI ++S YD  G L   
Sbjct: 117 NLKEIHLHSKSLQTLPSHISLVILEQAISFSDVAKLVVWCMAMGIKYISVYDHKGILKGD 176

Query: 434 EEKLFNAVEKNKKGV----PGCIKWSKKPDLNGYTNGIPAHKIVVNIFSCQNGRSTITQC 601
             KL + +   +K V         +  +     + + +   ++ + + S ++G+  I + 
Sbjct: 177 TAKLSSEIIYKQKEVFAKEAKRYTFVLRNSRTKFDHTLAPTQVCITVLSAEDGKQDIVEA 236

Query: 602 IKEMCEEKIPYNRKSDQITAQEFDDVISAVYPSIP 706
            +E C           Q+    F+D++      IP
Sbjct: 237 AQEFCMSVKQKKYSPKQLDTDLFNDMLKDQTHRIP 271


>SB_31433| Best HMM Match : Prenyltransf (HMM E-Value=0.25)
          Length = 214

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
 Frame = +2

Query: 374 LVAGIPFLSFYDVSGQLSYQEEKLFNAVEKNKKGV----PGCIKWSKKPDLNGYTNGIPA 541
           +  GI ++S YD  G L     KL + +   +K V         +  +     + + +  
Sbjct: 1   MAMGIKYISVYDHKGILKGDTAKLSSEIIYKQKEVFAKEAKRYTFVLRNSRTKFDHTLAP 60

Query: 542 HKIVVNIFSCQNGRSTITQCIKEMCEEKIPYNRKSDQITAQEFDDVISAVYPSIPDPDLA 721
            ++ + + S ++G+  I +  +E C           Q+    F+D++ A    +PDPDLA
Sbjct: 61  TQVCITVLSAEDGKQDIVEAAQEFCMSVKQKEYSPKQLDTDLFNDMLKAT-TGLPDPDLA 119

Query: 722 LFSGPV 739
           L  G V
Sbjct: 120 LKFGAV 125


>SB_15229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 446 FNAVEKNKKGVPGCIKWSKKPDLNGY-TNGIPAHKIVVNIFSCQNGRSTITQCIKEMCEE 622
           FN V  +   + GCI+W        Y  + +P H ++  ++   NG S+ T CI E  + 
Sbjct: 3   FNGVSSSTMCITGCIQWRVIIYYVHYGMHSMPCHHLLCALWDAFNGVSSSTMCITECIQW 62

Query: 623 KI 628
           ++
Sbjct: 63  RV 64


>SB_10840| Best HMM Match : DUF368 (HMM E-Value=4.5)
          Length = 331

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 446 FNAVEKNKKGVPGCIKWSKKPDLNGY-TNGIPAHKIVVNIFSCQNGRSTITQCIKEMCEE 622
           FN V  +   + GCI+W        Y  + +P H ++  ++   NG S+ T CI E  + 
Sbjct: 3   FNGVSSSTMCITGCIQWRVIIYYVHYGMHSMPCHHLLCALWDAFNGVSSSTMCITECIQW 62

Query: 623 KI 628
           ++
Sbjct: 63  RV 64


>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
          Length = 623

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 29/113 (25%), Positives = 53/113 (46%)
 Frame = +2

Query: 287 LSKQPKHLVVLSDSDYHSIDDLARMVIWSLVAGIPFLSFYDVSGQLSYQEEKLFNAVEKN 466
           LS    HLVV  +     +D++   ++ S       L  +D++ + S+ ++K    V   
Sbjct: 228 LSAFSNHLVVTHEEQ---MDEMVLDLVVSPGMSDHDLVLFDLNLKPSFNKKKP-RKVFVF 283

Query: 467 KKGVPGCIKWSKKPDLNGYTNGIPAHKIVVNIFSCQNGRSTITQCIKEMCEEK 625
           KKG  G +K   K  L+ Y N    HK++   +     ++TIT+ +K+   +K
Sbjct: 284 KKGNMGAVKTDLKKHLDNYFNNEAYHKLINENYDF--FKTTITEIMKKHIPQK 334


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 500  KKPDLNGYTNGIPAHKIVVNIFSCQNGRSTITQCIKEMCE 619
            K   L GY     A   V ++F C    +T+T+ ++E C+
Sbjct: 1586 KDDSLCGYVMANGADSFVCHVFQCSPNAATLTKALREACQ 1625


>SB_49455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 22/77 (28%), Positives = 39/77 (50%)
 Frame = +2

Query: 395 LSFYDVSGQLSYQEEKLFNAVEKNKKGVPGCIKWSKKPDLNGYTNGIPAHKIVVNIFSCQ 574
           L  +D++ + S+ ++K    V   KKG  G +K   K  L+ Y N    HK++   +   
Sbjct: 655 LVLFDLNLKPSFNKKKP-RKVFVFKKGNMGAVKTDLKKHLDNYFNNEAYHKLINENYDF- 712

Query: 575 NGRSTITQCIKEMCEEK 625
             ++TIT+ IK+   +K
Sbjct: 713 -FKTTITEIIKKHIPQK 728


>SB_42675| Best HMM Match : TFIIS_C (HMM E-Value=0.63)
          Length = 190

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 6/36 (16%)
 Frame = +2

Query: 173 FIVGAQNVYCRYWL----KKHSLQD--YEVTKTDLK 262
           +++GAQ V C YWL    KK ++QD  YE     LK
Sbjct: 151 WVIGAQQVGCTYWLSGLYKKETVQDMPYEENAAGLK 186


>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1995

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +2

Query: 521 YTNGIPAHKIVVNIFSCQNGRSTITQCIKEMCEEKIP----YNRKS 646
           Y   +P   +VV    C  G+S   +C K + +  +P    YNRK+
Sbjct: 175 YYRALPDRSLVVRGADCHGGKSENPRCFKNLDKNSLPVVYKYNRKA 220


>SB_29875| Best HMM Match : PHD (HMM E-Value=0.0014)
          Length = 598

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 20/77 (25%), Positives = 39/77 (50%)
 Frame = +2

Query: 395 LSFYDVSGQLSYQEEKLFNAVEKNKKGVPGCIKWSKKPDLNGYTNGIPAHKIVVNIFSCQ 574
           L  +D++ + S+ ++K    V   KKG  G +K   +  L+ Y N    HK++   +   
Sbjct: 341 LVLFDLNLKPSFNKKKP-RKVFVFKKGNMGAVKTDLRKHLDNYFNNEAYHKLITENYDF- 398

Query: 575 NGRSTITQCIKEMCEEK 625
             ++TIT+ +K+   +K
Sbjct: 399 -FKTTITEIMKKHIPQK 414


>SB_4958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/55 (21%), Positives = 28/55 (50%)
 Frame = -2

Query: 650 GHFFYYMEFFPHTFL*YIV*LWNVRSDKKKYSQQFYVQECHLYTHSNQVSLTILY 486
           G++FY ++  PH    Y +  W    D +  +++ ++    ++     VS+++LY
Sbjct: 12  GNYFYCLKLVPHGGDFYCIYTWEPLYDSRDVTRKTFIPILMIFYFIPLVSISVLY 66


>SB_35016| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8)
          Length = 412

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 21/77 (27%), Positives = 39/77 (50%)
 Frame = +2

Query: 395 LSFYDVSGQLSYQEEKLFNAVEKNKKGVPGCIKWSKKPDLNGYTNGIPAHKIVVNIFSCQ 574
           L  +D++ + S+ ++K    V   KKG  G +K   K  L+ Y N    HK++   +   
Sbjct: 228 LVLFDLNLKPSFNKKKP-RKVFLFKKGNMGAVKTDLKKHLDNYFNNEAYHKLINENYDF- 285

Query: 575 NGRSTITQCIKEMCEEK 625
             ++TIT+ +K+   +K
Sbjct: 286 -FKTTITEIMKKHIPQK 301


>SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)
          Length = 822

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 632 YNRKSDQITAQEFDDVISAVYPSIPDPDLA 721
           +   +  +  QEF D+I AVY ++PD + A
Sbjct: 370 FGEVTKNLNRQEFRDIIDAVYATLPDEEEA 399


>SB_45783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 31

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 411 YQVNFHIKKKNFLMQLRRTRKVFRGV 488
           Y + F IK+    +Q+R TR  FRGV
Sbjct: 5   YGLRFSIKRARVRIQIRSTRDFFRGV 30


>SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 476 HLSCSSQLH*KVFLLDMKVDLIHHKNLKTVFRL 378
           H++   +LH ++FL+D  V L HH + K   RL
Sbjct: 63  HVAGEKRLHRELFLMDTSVKLGHHDSNKARKRL 95


>SB_6034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 31

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 411 YQVNFHIKKKNFLMQLRRTRKVFRGV 488
           Y + F IK+    +Q+R TR  FRGV
Sbjct: 5   YGLRFSIKRARVRIQIRSTRDFFRGV 30


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,626,114
Number of Sequences: 59808
Number of extensions: 426515
Number of successful extensions: 1031
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)