Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0772
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera...    30   1.4  
At1g03960.2 68414.m00382 calcium-binding EF hand family protein ...    30   1.9  
At1g03960.1 68414.m00381 calcium-binding EF hand family protein ...    30   1.9  
At3g55160.1 68416.m06126 expressed protein                             29   3.3  
At1g66630.1 68414.m07571 seven in absentia (SINA) family protein...    29   3.3  
At5g44090.1 68418.m05394 calcium-binding EF hand family protein,...    29   4.4  
At1g09600.1 68414.m01077 protein kinase family protein contains ...    29   4.4  
At1g68030.1 68414.m07772 PHD finger protein-related contains low...    28   5.8  

>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 456

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = +2

Query: 182 GAQNVYCRYWLKKHSLQDYEVTKTDLKLIVKHIPKLSKQPKHLVVLSDSDYHSI----DD 349
           GA +VY RY++K +S  D E     ++L    + ++   P  ++    + ++++     D
Sbjct: 136 GAYSVYYRYYMKTNSFPDLEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFYNLMAEFAD 195

Query: 350 LARMVIWSLVAGIPFLSFYDVSGQL 424
             R V W LV      SFY++  ++
Sbjct: 196 CLRYVKWVLVN-----SFYELESEI 215


>At1g03960.2 68414.m00382 calcium-binding EF hand family protein
           contains Pfam profile: PF00036 EF hand
          Length = 389

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +2

Query: 350 LARMVIWSLVAGIPFLSFYDVSGQLSYQEEKLFNAVEKNKKGVPGCIKWSKKPDLNGYTN 529
           L   ++  + + IP      V G++SY++   F   E++K   P    W K  DL+G  N
Sbjct: 201 LTYRIVDRIFSQIPRKFTSKVEGKMSYEDFVYFILAEEDKSSEPSLEYWFKCVDLDG--N 258

Query: 530 GI 535
           G+
Sbjct: 259 GV 260


>At1g03960.1 68414.m00381 calcium-binding EF hand family protein
           contains Pfam profile: PF00036 EF hand
          Length = 529

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +2

Query: 350 LARMVIWSLVAGIPFLSFYDVSGQLSYQEEKLFNAVEKNKKGVPGCIKWSKKPDLNGYTN 529
           L   ++  + + IP      V G++SY++   F   E++K   P    W K  DL+G  N
Sbjct: 341 LTYRIVDRIFSQIPRKFTSKVEGKMSYEDFVYFILAEEDKSSEPSLEYWFKCVDLDG--N 398

Query: 530 GI 535
           G+
Sbjct: 399 GV 400


>At3g55160.1 68416.m06126 expressed protein
          Length = 2149

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 527 NGIPAHKIVVNIFS-CQNGRSTITQCIKEMCEE 622
           N +P HK +V+  +      S I+ C KE+C+E
Sbjct: 103 NSLPLHKTLVSALAKTTKFHSVISSCFKELCDE 135


>At1g66630.1 68414.m07571 seven in absentia (SINA) family protein
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 303

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 542 HKIVVNIFSCQNGRSTITQCIKEMCEEKIPY-NRKSDQITAQEFDDVISAVYPSIPD 709
           HK+   I+ C NG    + C K++ + K PY + +     ++  + ++ AV  S P+
Sbjct: 54  HKLGAPIYQCDNGHIACSSCCKKV-KYKCPYCSLRIGFFRSRILEKIVEAVVVSCPN 109


>At5g44090.1 68418.m05394 calcium-binding EF hand family protein,
           putative / protein phosphatase 2A 62 kDa B'' regulatory
           subunit, putative contains Pfam profile: PF00036 EF
           hand; identical to cDNA protein phosphatase 2A 62 kDa
           B'' regulatory subunit GI:5533378
          Length = 538

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 410 VSGQLSYQEEKLFNAVEKNKKGVPGCIKWSKKPDLNG 520
           V G++SY++   F   E++K   P    W K  DL+G
Sbjct: 370 VEGKMSYEDFAYFILAEEDKSSEPSLEYWFKCIDLDG 406


>At1g09600.1 68414.m01077 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 714

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 573 RTDVPQLHNVSKKCVRKKFHIIEKVTKLPHKNLMM*YQQY 692
           RT+V QLH + K C         K++KLPH  +    Q Y
Sbjct: 367 RTEVEQLHKIFKLC-GSPSEEYWKISKLPHATIFKPQQPY 405


>At1g68030.1 68414.m07772 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 314

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = +2

Query: 467 KKGVPGCIKWSKKPDLNGYTNGIP--AHKIVVNIFSCQNGRSTITQCIKEMCEEKIPYNR 640
           K G PG  KW+ +P +      +P  A ++++   SC+N  + ++ C +E  E      +
Sbjct: 113 KPGAPGLTKWNLQPFIKHKLLSLPKCALELMIEPSSCEND-TQVSPCSEE--ETLRSDGK 169

Query: 641 KSDQIT 658
           ++D++T
Sbjct: 170 ENDRVT 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,063,794
Number of Sequences: 28952
Number of extensions: 305897
Number of successful extensions: 881
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)