Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0769
(838 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L42856-1|AAA75522.1| 118|Homo sapiens RNA polymerase II transcr... 137 5e-32
BC065000-1|AAH65000.1| 118|Homo sapiens transcription elongatio... 137 5e-32
BC013306-1|AAH13306.1| 118|Homo sapiens transcription elongatio... 137 5e-32
AC004493-1|AAC08452.1| 72|Homo sapiens elongin B protein. 75 4e-13
AB065679-1|BAC45260.1| 919|Homo sapiens seven transmembrane hel... 33 1.7
CR407662-1|CAG28590.1| 81|Homo sapiens NEDD8 protein. 31 3.9
D23662-1|BAA04889.1| 81|Homo sapiens ubiquitin-like protein pr... 31 5.2
BC104664-1|AAI04665.1| 81|Homo sapiens neural precursor cell e... 31 5.2
BC104201-1|AAI04202.1| 81|Homo sapiens neural precursor cell e... 31 5.2
BC104200-1|AAI04201.1| 81|Homo sapiens neural precursor cell e... 31 5.2
>L42856-1|AAA75522.1| 118|Homo sapiens RNA polymerase II
transcription factor SIII p18 subunit protein.
Length = 118
Score = 137 bits (331), Expect = 5e-32
Identities = 67/110 (60%), Positives = 85/110 (77%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
MDVFLMIRR K T+FTDAKE++TV ELK+++EGILK PP Q L+ KD QL++D KTL E
Sbjct: 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY-KDDQLLDDGKTLGE 59
Query: 236 FGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQET 385
G TS TA+ PA +GLA R ++ FEAL + P+SSPP+LPDVMK Q++
Sbjct: 60 CGFTSQTARPQAPATVGLAFRADD-TFEALCIEPFSSPPELPDVMKPQDS 108
>BC065000-1|AAH65000.1| 118|Homo sapiens transcription elongation
factor B (SIII), polypeptide 2 (18kDa, elongin B)
protein.
Length = 118
Score = 137 bits (331), Expect = 5e-32
Identities = 67/110 (60%), Positives = 85/110 (77%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
MDVFLMIRR K T+FTDAKE++TV ELK+++EGILK PP Q L+ KD QL++D KTL E
Sbjct: 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY-KDDQLLDDGKTLGE 59
Query: 236 FGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQET 385
G TS TA+ PA +GLA R ++ FEAL + P+SSPP+LPDVMK Q++
Sbjct: 60 CGFTSQTARPQAPATVGLAFRADD-TFEALCIEPFSSPPELPDVMKPQDS 108
>BC013306-1|AAH13306.1| 118|Homo sapiens transcription elongation
factor B (SIII), polypeptide 2 (18kDa, elongin B)
protein.
Length = 118
Score = 137 bits (331), Expect = 5e-32
Identities = 67/110 (60%), Positives = 85/110 (77%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
MDVFLMIRR K T+FTDAKE++TV ELK+++EGILK PP Q L+ KD QL++D KTL E
Sbjct: 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLY-KDDQLLDDGKTLGE 59
Query: 236 FGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQET 385
G TS TA+ PA +GLA R ++ FEAL + P+SSPP+LPDVMK Q++
Sbjct: 60 CGFTSQTARPQAPATVGLAFRADD-TFEALCIEPFSSPPELPDVMKPQDS 108
>AC004493-1|AAC08452.1| 72|Homo sapiens elongin B protein.
Length = 72
Score = 74.5 bits (175), Expect = 4e-13
Identities = 35/63 (55%), Positives = 46/63 (73%)
Frame = +2
Query: 197 DSQLMEDEKTLAEFGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKS 376
D QL++D KTL E G TS TA+ PA +GLA R ++ FEAL + P+SSPP+LPDVMK
Sbjct: 1 DDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADD-TFEALCIEPFSSPPELPDVMKP 59
Query: 377 QET 385
Q++
Sbjct: 60 QDS 62
>AB065679-1|BAC45260.1| 919|Homo sapiens seven transmembrane helix
receptor protein.
Length = 919
Score = 32.7 bits (71), Expect = 1.7
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = -2
Query: 150 SIIFFNSNTVVVSFASVKTVSFFRLIIKKTSIMLFC 43
S+ F++S+ +++SF S KT++ F + S++ FC
Sbjct: 713 SLHFWSSSCLLISFESQKTLNVFHFFVLHISVLFFC 748
>CR407662-1|CAG28590.1| 81|Homo sapiens NEDD8 protein.
Length = 81
Score = 31.5 bits (68), Expect = 3.9
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 68 LMIRRKKLT---VFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAEF 238
++I+ K LT + D + T V +K+ +E +PP Q L Q M DEKT A++
Sbjct: 1 MLIKVKTLTGKEIEVDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQ-MNDEKTAADY 59
>D23662-1|BAA04889.1| 81|Homo sapiens ubiquitin-like protein
protein.
Length = 81
Score = 31.1 bits (67), Expect = 5.2
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 68 LMIRRKKLT---VFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAEF 238
++I+ K LT + D + T V +K+ +E +PP Q L Q M DEKT A++
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQ-MNDEKTAADY 59
>BC104664-1|AAI04665.1| 81|Homo sapiens neural precursor cell
expressed, developmentally down-regulated 8 protein.
Length = 81
Score = 31.1 bits (67), Expect = 5.2
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 68 LMIRRKKLT---VFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAEF 238
++I+ K LT + D + T V +K+ +E +PP Q L Q M DEKT A++
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQ-MNDEKTAADY 59
>BC104201-1|AAI04202.1| 81|Homo sapiens neural precursor cell
expressed, developmentally down-regulated 8 protein.
Length = 81
Score = 31.1 bits (67), Expect = 5.2
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 68 LMIRRKKLT---VFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAEF 238
++I+ K LT + D + T V +K+ +E +PP Q L Q M DEKT A++
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQ-MNDEKTAADY 59
>BC104200-1|AAI04201.1| 81|Homo sapiens neural precursor cell
expressed, developmentally down-regulated 8 protein.
Length = 81
Score = 31.1 bits (67), Expect = 5.2
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 68 LMIRRKKLT---VFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAEF 238
++I+ K LT + D + T V +K+ +E +PP Q L Q M DEKT A++
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQ-MNDEKTAADY 59
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,825,439
Number of Sequences: 237096
Number of extensions: 2543995
Number of successful extensions: 11486
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11478
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10538170902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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