Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0769
         (838 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032627-13|CAA21548.1|  118|Caenorhabditis elegans Hypothetical...    75   5e-14
AF326942-1|AAG49392.1|  118|Caenorhabditis elegans RNA polymeras...    75   5e-14
Z78420-1|CAB01708.1|   77|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical...    29   5.4  
Z49911-7|CAA90129.1|  861|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical pr...    28   9.5  
Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical p...    28   9.5  
AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical ...    28   9.5  
AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical ...    28   9.5  

>AL032627-13|CAA21548.1|  118|Caenorhabditis elegans Hypothetical
           protein Y41C4A.10 protein.
          Length = 118

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
 Frame = +2

Query: 59  DVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKD-----SQLMEDEK 223
           ++F  +RR +  ++ DA+E+ +V+ELK M+ GI + P     L+  D     SQL+ D  
Sbjct: 5   ELFFEVRRNRSHIYLDAEESHSVMELKLMLAGITRDPVNHMELWKLDEDGNKSQLLHDTA 64

Query: 224 TLAEFGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQE 382
           TL++ G +S  AKA CPA +G  LR  N E E L ++  S+ P +PD M+ ++
Sbjct: 65  TLSDAGFSSTNAKAQCPAALG--LRLTNAE-EHLTISDVSTAPPIPDTMRQEQ 114


>AF326942-1|AAG49392.1|  118|Caenorhabditis elegans RNA polymerase
           II transcriptionfactor SIII p18 subunit protein.
          Length = 118

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 42/113 (37%), Positives = 67/113 (59%), Gaps = 5/113 (4%)
 Frame = +2

Query: 59  DVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKD-----SQLMEDEK 223
           ++F  +RR +  ++ DA+E+ +V+ELK M+ GI + P     L+  D     SQL+ D  
Sbjct: 5   ELFFEVRRNRSHIYLDAEESHSVMELKLMLAGITRDPVNHMELWKLDEDGNKSQLLHDTA 64

Query: 224 TLAEFGLTSNTAKAHCPAPIGLALRKENGEFEALELTPYSSPPDLPDVMKSQE 382
           TL++ G +S  AKA CPA +G  LR  N E E L ++  S+ P +PD M+ ++
Sbjct: 65  TLSDAGFSSTNAKAQCPAALG--LRLTNAE-EHLTISDVSTAPPIPDTMRQEQ 114


>Z78420-1|CAB01708.1|   77|Caenorhabditis elegans Hypothetical
           protein F45H11.2 protein.
          Length = 77

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +2

Query: 68  LMIRRKKLT---VFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAEF 238
           ++I+ K LT   +  D +    V  +K+ +E    +PPP Q L     Q M D+KT A++
Sbjct: 1   MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQ-MNDDKTAADY 59


>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical protein
            R11A8.6 protein.
          Length = 1141

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
 Frame = +2

Query: 125  VLELKKMI---EGI-LKVPPPSQMLFNKDSQLMEDEKTLAEFGLTS-NTAK---AHCPAP 280
            V++L +++   EG+ +K P    ++ N+DSQ +ED K+L  + L   N  K   +     
Sbjct: 821  VIDLVRLVRDREGLAVKYPLKEMIVINRDSQFLEDVKSLESYILLELNVRKLTVSQDKQK 880

Query: 281  IGLALRKENGEFEALELTPYSSPPDLPDVMKSQETNGQ 394
             G+ L+ E   F+ L          + D +K+Q T  +
Sbjct: 881  YGITLKAE-PNFKILGARLKGEQKKVADYLKNQITESE 917


>U53155-4|AAC48265.1|  619|Caenorhabditis elegans Hypothetical
           protein ZC513.3 protein.
          Length = 619

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
 Frame = +2

Query: 68  LMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQL-MEDEKTLAEFG- 241
           LMI +K+ T+  D K    +  L    +G LK+  PS+++ N+  ++ M D  +   F  
Sbjct: 49  LMISKKQNTISADKKTAYEMRTLGGQHKGFLKIDLPSEIMNNQAHKVGMPDRYSTTLFAP 108

Query: 242 -LTSNTAKAH 268
            +  N A+ H
Sbjct: 109 PVPENKAQIH 118


>AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical
           protein Y102A5C.33 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +3

Query: 540 GSRVQNIKQFYFLFTIKYFVINISIC--VPFNVL-LRFDLNIPSTVSTNIYIYIYKYMMH 710
           G  + NI    +L  + Y ++N+ IC   PF  + +   +     + +  +IYI++YM  
Sbjct: 177 GDEIMNITLSVYL--VLYIIVNVIICFLTPFIYIPIIIGMKKHRHLHSQQHIYIHEYMFI 234

Query: 711 RTLPPLLF 734
           +++  LLF
Sbjct: 235 QSIMVLLF 242


>Z49911-7|CAA90129.1|  861|Caenorhabditis elegans Hypothetical
           protein M28.9 protein.
          Length = 861

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 719 TSIIIWPFKIGLLIHLIALVVLTCKQTWFCLFICNVSEA 835
           T+I+ W   I L+I   AL ++TC   W C   C   E+
Sbjct: 100 TAIVFWSVGIVLIIIAAALCIVTC--IWQCCSTCAPRES 136


>Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical
           protein T25E12.4a protein.
          Length = 1101

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 473 YDTKLVSVSSTSESQPRFSFNVDPSVPVHWSLEIS*HLASRGVKNTG 333
           Y T + S S++  +  RFS +  PS+P H       H  S   K  G
Sbjct: 10  YYTSMPSSSTSMVTTTRFSTSFSPSIPCHRQENFRRHSTSALAKRNG 56


>Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical
           protein T25E12.4a protein.
          Length = 1101

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 473 YDTKLVSVSSTSESQPRFSFNVDPSVPVHWSLEIS*HLASRGVKNTG 333
           Y T + S S++  +  RFS +  PS+P H       H  S   K  G
Sbjct: 10  YYTSMPSSSTSMVTTTRFSTSFSPSIPCHRQENFRRHSTSALAKRNG 56


>AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical
           protein T25E12.4a protein.
          Length = 1101

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 473 YDTKLVSVSSTSESQPRFSFNVDPSVPVHWSLEIS*HLASRGVKNTG 333
           Y T + S S++  +  RFS +  PS+P H       H  S   K  G
Sbjct: 10  YYTSMPSSSTSMVTTTRFSTSFSPSIPCHRQENFRRHSTSALAKRNG 56


>AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical
           protein T25E12.4a protein.
          Length = 1101

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 473 YDTKLVSVSSTSESQPRFSFNVDPSVPVHWSLEIS*HLASRGVKNTG 333
           Y T + S S++  +  RFS +  PS+P H       H  S   K  G
Sbjct: 10  YYTSMPSSSTSMVTTTRFSTSFSPSIPCHRQENFRRHSTSALAKRNG 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,002,393
Number of Sequences: 27780
Number of extensions: 407344
Number of successful extensions: 1030
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)