Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0769
(838 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g05260.1 68417.m00795 ubiquitin family protein contains INTER... 31 0.95
At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to poly... 31 1.3
At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to polyu... 30 2.2
At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677 29 2.9
At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to GI:92... 29 2.9
At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to GI:92... 29 2.9
At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3) senescence... 29 2.9
At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3) senescence... 29 2.9
At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3) senescence... 29 2.9
At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3) senescence... 29 2.9
At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3) senescence... 29 2.9
At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to GI:3... 29 2.9
At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to GI:1... 29 2.9
At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to GI:1... 29 2.9
At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to GI:1... 29 2.9
At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / ... 29 2.9
At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / ... 29 2.9
At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / ... 29 2.9
At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / ... 29 2.9
At2g35635.1 68415.m04370 ubiquitin family protein contains INTER... 29 2.9
At1g65350.1 68414.m07413 polyubiquitin, putative similar to poly... 29 2.9
At1g31340.1 68414.m03835 ubiquitin family protein contains INTER... 29 2.9
At1g23410.1 68414.m02932 ubiquitin extension protein, putative /... 29 2.9
At1g50790.1 68414.m05712 hypothetical protein 29 5.1
At5g56380.1 68418.m07038 F-box family protein similar to unknown... 28 6.7
>At4g05260.1 68417.m00795 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 259
Score = 31.1 bits (67), Expect = 0.95
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 122 TVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAEFGLTSNT 256
TVLE+KK IE ++P P+Q LF ++ +ED + + + N+
Sbjct: 22 TVLEIKKKIEKYQRIPVPNQTLFFGNA--LEDHLDIGQCKILQNS 64
>At1g55060.1 68414.m06289 polyubiquitin (UBQ12) identical to
polyubiquitin (ubq12) gene sequence GI:304121 from
[Arabidopsis thaliana]
Length = 230
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ LK I+ +PP Q L QL ED +TLA+
Sbjct: 77 MQIFVKTLTGK-TITLEVESSDTIDNLKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 134
Query: 236 FGL 244
+ +
Sbjct: 135 YNI 137
>At5g37640.1 68418.m04533 polyubiquitin (UBQ9) identical to
polyubiquitin (ubq9) gene sequence GI:304120 from
[Arabidopsis thaliana]
Length = 322
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ +K T+ + + + T +K I+ +PP Q L QL ED +TLA+
Sbjct: 155 MQIFVRTLTRK-TIALEVESSDTTDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 212
Query: 236 FGL 244
+ +
Sbjct: 213 YNI 215
>At5g20620.1 68418.m02449 polyubiquitin (UBQ4) identical to GI:17677
Length = 382
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58
Query: 236 FGL 244
+ +
Sbjct: 59 YNI 61
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 77 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 134
Query: 236 FGL 244
+ +
Sbjct: 135 YNI 137
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 210
Query: 236 FGL 244
+ +
Sbjct: 211 YNI 213
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 229 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 286
Query: 236 FGL 244
+ +
Sbjct: 287 YNI 289
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 305 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 362
Query: 236 FGL 244
+ +
Sbjct: 363 YNI 365
>At5g03240.2 68418.m00273 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58
Query: 236 FGL 244
+ +
Sbjct: 59 YNI 61
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 77 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 134
Query: 236 FGL 244
+ +
Sbjct: 135 YNI 137
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 210
Query: 236 FGL 244
+ +
Sbjct: 211 YNI 213
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 229 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 286
Query: 236 FGL 244
+ +
Sbjct: 287 YNI 289
>At5g03240.1 68418.m00272 polyubiquitin (UBQ3) identical to
GI:928809
Length = 306
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58
Query: 236 FGL 244
+ +
Sbjct: 59 YNI 61
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 77 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 134
Query: 236 FGL 244
+ +
Sbjct: 135 YNI 137
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 210
Query: 236 FGL 244
+ +
Sbjct: 211 YNI 213
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 229 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 286
Query: 236 FGL 244
+ +
Sbjct: 287 YNI 289
>At4g05320.5 68417.m00814 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 312
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58
Query: 236 FGL 244
+ +
Sbjct: 59 YNI 61
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 77 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 134
Query: 236 FGL 244
+ +
Sbjct: 135 YNI 137
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 210
Query: 236 FGL 244
+ +
Sbjct: 211 YNI 213
>At4g05320.4 68417.m00813 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58
Query: 236 FGL 244
+ +
Sbjct: 59 YNI 61
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 77 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 134
Query: 236 FGL 244
+ +
Sbjct: 135 YNI 137
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 210
Query: 236 FGL 244
+ +
Sbjct: 211 YNI 213
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 229 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 286
Query: 236 FGL 244
+ +
Sbjct: 287 YNI 289
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 305 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 362
Query: 236 FGL 244
+ +
Sbjct: 363 YNI 365
>At4g05320.3 68417.m00812 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58
Query: 236 FGL 244
+ +
Sbjct: 59 YNI 61
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 77 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 134
Query: 236 FGL 244
+ +
Sbjct: 135 YNI 137
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 210
Query: 236 FGL 244
+ +
Sbjct: 211 YNI 213
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 229 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 286
Query: 236 FGL 244
+ +
Sbjct: 287 YNI 289
>At4g05320.2 68417.m00811 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 464
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58
Query: 236 FGL 244
+ +
Sbjct: 59 YNI 61
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 77 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 134
Query: 236 FGL 244
+ +
Sbjct: 135 YNI 137
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 210
Query: 236 FGL 244
+ +
Sbjct: 211 YNI 213
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 229 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 286
Query: 236 FGL 244
+ +
Sbjct: 287 YNI 289
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 305 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 362
Query: 236 FGL 244
+ +
Sbjct: 363 YNI 365
>At4g05320.1 68417.m00810 polyubiquitin (UBQ10) (SEN3)
senescence-associated protein; identical to GI:870791
Length = 388
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58
Query: 236 FGL 244
+ +
Sbjct: 59 YNI 61
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 77 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 134
Query: 236 FGL 244
+ +
Sbjct: 135 YNI 137
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 210
Query: 236 FGL 244
+ +
Sbjct: 211 YNI 213
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 229 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 286
Query: 236 FGL 244
+ +
Sbjct: 287 YNI 289
>At4g05050.1 68417.m00744 polyubiquitin (UBQ11) identical to
GI:304117
Length = 229
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58
Query: 236 FGL 244
+ +
Sbjct: 59 YNI 61
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 77 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 134
Query: 236 FGL 244
+ +
Sbjct: 135 YNI 137
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 210
Query: 236 FGL 244
+ +
Sbjct: 211 YNI 213
>At4g02890.3 68417.m00391 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58
Query: 236 FGL 244
+ +
Sbjct: 59 YNI 61
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 77 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 134
Query: 236 FGL 244
+ +
Sbjct: 135 YNI 137
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 210
Query: 236 FGL 244
+ +
Sbjct: 211 YNI 213
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 229 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 286
Query: 236 FGL 244
+ +
Sbjct: 287 YNI 289
>At4g02890.2 68417.m00390 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 229
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58
Query: 236 FGL 244
+ +
Sbjct: 59 YNI 61
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 77 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 134
Query: 236 FGL 244
+ +
Sbjct: 135 YNI 137
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 210
Query: 236 FGL 244
+ +
Sbjct: 211 YNI 213
>At4g02890.1 68417.m00389 polyubiquitin (UBQ14) identical to
GI:166795; similar to N. sylvestris hexameric
polyubiquitin, GenBank accession number M74101
Length = 305
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58
Query: 236 FGL 244
+ +
Sbjct: 59 YNI 61
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 77 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 134
Query: 236 FGL 244
+ +
Sbjct: 135 YNI 137
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 210
Query: 236 FGL 244
+ +
Sbjct: 211 YNI 213
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 229 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 286
Query: 236 FGL 244
+ +
Sbjct: 287 YNI 289
>At3g62250.1 68416.m06993 ubiquitin extension protein 5 (UBQ5) / 40S
ribosomal protein S27A (RPS27aC) identical to GI:166933,
GI:166934
Length = 157
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58
Query: 236 FGL 244
+ +
Sbjct: 59 YNI 61
>At3g52590.1 68416.m05792 ubiquitin extension protein 1 (UBQ1) / 60S
ribosomal protein L40 (RPL40B) identical to GI:166929,
GI:166930
Length = 128
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58
Query: 236 FGL 244
+ +
Sbjct: 59 YNI 61
>At2g47110.1 68415.m05883 ubiquitin extension protein 6 (UBQ6) / 40S
ribosomal protein S27A (RPS27aB) identical to GI:166936
Length = 157
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58
Query: 236 FGL 244
+ +
Sbjct: 59 YNI 61
>At2g36170.1 68415.m04439 ubiquitin extension protein 2 (UBQ2) / 60S
ribosomal protein L40 (RPL40A) identical to GI:166930,
GI:166931
Length = 128
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58
Query: 236 FGL 244
+ +
Sbjct: 59 YNI 61
>At2g35635.1 68415.m04370 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 154
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58
Query: 236 FGL 244
+ +
Sbjct: 59 YNI 61
>At1g65350.1 68414.m07413 polyubiquitin, putative similar to
polyubiquitin GI:248337 from [Zea mays]
Length = 294
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58
Query: 236 FGL 244
+ +
Sbjct: 59 YNI 61
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 152 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEWIPPDQQRLIFAGKQL-EDGRTLAD 209
Query: 236 FGL 244
+ +
Sbjct: 210 YNI 212
>At1g31340.1 68414.m03835 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 156
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58
Query: 236 FGL 244
+ +
Sbjct: 59 YNI 61
>At1g23410.1 68414.m02932 ubiquitin extension protein, putative /
40S ribosomal protein S27A (RPS27aA) strong similarity
to ubiquitin extension protein (UBQ5) GB:AAA32906
GI:166934 from (Arabidopsis thaliana)
Length = 156
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 56 MDVFLMIRRKKLTVFTDAKETTTVLELKKMIEGILKVPPPSQMLFNKDSQLMEDEKTLAE 235
M +F+ K T+ + + + T+ +K I+ +PP Q L QL ED +TLA+
Sbjct: 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58
Query: 236 FGL 244
+ +
Sbjct: 59 YNI 61
>At1g50790.1 68414.m05712 hypothetical protein
Length = 812
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 400 DGSTLNEKRGCDSDVDDTDTNFVS*RFCIFKKK 498
DGST+ +K+ D DD D+ V+ ++KKK
Sbjct: 494 DGSTMGQKQVISDDADDDDSLTVAQITTLYKKK 526
>At5g56380.1 68418.m07038 F-box family protein similar to unknown
protein (emb|CAB62440.1); contains Pfam profile PF00646:
F-box domain
Length = 439
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +2
Query: 716 STSIIIWPFKIGLLIH-LIALVVLTCKQTWFCLFI 817
S + +++P +G H L L V TCK W LFI
Sbjct: 297 SATEVVYPVGLGSSFHKLKRLEVCTCKSEWLDLFI 331
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,620,185
Number of Sequences: 28952
Number of extensions: 366725
Number of successful extensions: 930
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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