Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0629
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 42 5e-04
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 41 0.001
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 40 0.002
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 35 0.080
07_03_1192 + 24698355-24698433,24699312-24699391,24700027-247004... 31 0.98
07_03_1193 - 24702135-24702421,24702835-24703160,24703240-247039... 30 2.3
03_04_0076 - 17068516-17068838,17068897-17069198,17069282-170694... 29 3.0
04_04_0658 + 27006245-27006305,27006447-27006523,27006798-270072... 29 4.0
03_04_0075 + 17066321-17066381,17066476-17067534,17067641-17067927 29 4.0
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +3
Query: 3 SEAAAQEIEEFFSTHESPGAERSVQQALESVRLNAAWLR--RDLASTATYLH 152
S+ EI +FF+T PG ER+++Q+LE V +NA W+ R A A +H
Sbjct: 811 SKEKEAEISQFFATRTKPGYERTLKQSLERVLINARWIEGIRGEAKLAQTVH 862
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 41.1 bits (92), Expect = 0.001
Identities = 16/38 (42%), Positives = 28/38 (73%)
Frame = +3
Query: 3 SEAAAQEIEEFFSTHESPGAERSVQQALESVRLNAAWL 116
S+ EI +FF+T PG +R+++Q+LE+VR++A W+
Sbjct: 860 SKEKEAEISQFFATRTKPGFKRALKQSLENVRISARWV 897
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +3
Query: 3 SEAAAQEIEEFFSTHESPGAERSVQQALESVRLNAAWL 116
+E A E+ EFF+ P ER+++Q+LE VR++A W+
Sbjct: 757 TEEKAAEVSEFFAGKTKPSFERALKQSLERVRISARWI 794
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 34.7 bits (76), Expect = 0.080
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 3 SEAAAQEIEEFFSTHESPGAERSVQQALESVRLNAAWL 116
++ + EEFF + R+V+Q++E VR+NA W+
Sbjct: 821 TDEMGDDAEEFFKSRTKANIARTVKQSIERVRINAKWV 858
>07_03_1192 +
24698355-24698433,24699312-24699391,24700027-24700483,
24700641-24700794,24700878-24701155,24701225-24701517
Length = 446
Score = 31.1 bits (67), Expect = 0.98
Identities = 8/17 (47%), Positives = 15/17 (88%)
Frame = -2
Query: 541 IRIHFNIRINYNEYWLI 491
IR+H+++++NY EYW +
Sbjct: 288 IRVHWHVKVNYKEYWRV 304
>07_03_1193 -
24702135-24702421,24702835-24703160,24703240-24703910,
24704342-24704421,24704515-24704572
Length = 473
Score = 29.9 bits (64), Expect = 2.3
Identities = 7/15 (46%), Positives = 14/15 (93%)
Frame = -2
Query: 541 IRIHFNIRINYNEYW 497
+R+H+++++NY EYW
Sbjct: 317 VRVHWHVKLNYREYW 331
>03_04_0076 -
17068516-17068838,17068897-17069198,17069282-17069435,
17069506-17069965,17070413-17070492,17070813-17070869,
17071757-17071838
Length = 485
Score = 29.5 bits (63), Expect = 3.0
Identities = 7/17 (41%), Positives = 15/17 (88%)
Frame = -2
Query: 541 IRIHFNIRINYNEYWLI 491
IR+H+++++NY +YW +
Sbjct: 309 IRVHWHVKLNYRDYWRV 325
>04_04_0658 +
27006245-27006305,27006447-27006523,27006798-27007225,
27007614-27007882,27007966-27008249
Length = 372
Score = 29.1 bits (62), Expect = 4.0
Identities = 7/17 (41%), Positives = 15/17 (88%)
Frame = -2
Query: 541 IRIHFNIRINYNEYWLI 491
+R+H++++I+Y EYW +
Sbjct: 217 VRVHWHVKISYREYWRV 233
>03_04_0075 + 17066321-17066381,17066476-17067534,17067641-17067927
Length = 468
Score = 29.1 bits (62), Expect = 4.0
Identities = 7/15 (46%), Positives = 14/15 (93%)
Frame = -2
Query: 541 IRIHFNIRINYNEYW 497
IR+H+++++NY +YW
Sbjct: 312 IRVHWHVKLNYKDYW 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,668,099
Number of Sequences: 37544
Number of extensions: 229665
Number of successful extensions: 390
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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