BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0628 (759 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 33 0.058 SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 27 2.2 SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 2.2 SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 27 3.8 SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 3.8 SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 26 5.1 SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 26 6.7 SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 26 6.7 SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha... 25 8.9 SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 25 8.9 >SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Schizosaccharomyces pombe|chr 3|||Manual Length = 329 Score = 32.7 bits (71), Expect = 0.058 Identities = 18/74 (24%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Frame = +2 Query: 206 VLYLRVETCLVFVYLFYVDIVLFVSQLCK-*KVHDVIIQVVNFICVSLLSFQLSLISNSS 382 +L+L + C++FVY+ D++L + +C + V++ +V+ +C+ +F+ +L + Sbjct: 169 ILWLII-CCILFVYIKSGDLILNKALICSTCTISAVLLLIVSSVCIPFWTFERTLAKLAK 227 Query: 383 PYLLHAIFFIALVG 424 LL + + L G Sbjct: 228 VLLLQSGIVLVLNG 241 >SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 553 Score = 27.5 bits (58), Expect = 2.2 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 1/104 (0%) Frame = +3 Query: 126 IFLNILFYNLYNIKAIIKVIFVHYLLMCCI*GWKLAWFLFTYSMWILCYSYLNYVNKKYT 305 I++N FY LYNIK I +I ++ C+ L FL YS IL + ++ K++ Sbjct: 2 IYIN--FYELYNIKNIRPLIPSFHV---CL----LIMFLILYSQEILSFFFM---CSKFS 49 Query: 306 M**FRL*ILFV*AYSHSNFLSFPTR-RRISYMLFFLLPL*ANEH 434 M + +LF +S T R++ Y + L L A+E+ Sbjct: 50 MNSLKFCVLFSFKTVYSLLKLIKTLIRKLLYCFHYALDLFADEY 93 >SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 544 Score = 27.5 bits (58), Expect = 2.2 Identities = 15/57 (26%), Positives = 26/57 (45%) Frame = -3 Query: 496 SVPGIAEVHGRR*PLTSRWAVCSFAYKGNKKNSM*EIRRRVGNERKLE*E*AYTNKI 326 S P + +H + VC +Y+GN+K + G E+KL+ + A +I Sbjct: 34 SSPNESVIHSSHSASEADEYVCKLSYEGNRKKRIYNGSAEAGKEKKLQKQRAQEERI 90 >SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1260 Score = 26.6 bits (56), Expect = 3.8 Identities = 11/44 (25%), Positives = 24/44 (54%) Frame = -1 Query: 435 YVRLPTRAIKKIACKRYGDELEMRESWNESRLTQIKFTT*IITS 304 Y PT I+++ C G+E+ + + +R++ I+ T + T+ Sbjct: 42 YDDAPTEGIRRVLCYASGEEIPRKVPLDLTRVSSIRMGTTVATN 85 >SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1065 Score = 26.6 bits (56), Expect = 3.8 Identities = 11/42 (26%), Positives = 23/42 (54%) Frame = +1 Query: 292 IKSTRCDNSGCKFYLCKPTLIPTFSHFQLVAVSLTCYFFYCP 417 I ++ CDN+ +++L P L+P ++ + + V C + P Sbjct: 1001 IVNSVCDNAVSQYFLVTPKLLPDLTYHRNLKVLCICNGAWLP 1042 >SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr 2|||Manual Length = 1136 Score = 26.2 bits (55), Expect = 5.1 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 8/51 (15%) Frame = +3 Query: 600 VLQFLNENWRVVTEEFGQPVVDYA---LNV-----TVNTAKKFFDAVPYDE 728 ++ FL EN ++ E+F + VD LN +VNTA +FF A+ Y E Sbjct: 730 LVSFLLENSALLLEKFEEEDVDSTNCNLNTMEALASVNTALQFFSALNYSE 780 >SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces pombe|chr 1|||Manual Length = 1163 Score = 25.8 bits (54), Expect = 6.7 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = +3 Query: 603 LQFLNENWRVVTEEFG-QPVVDYALNVTVNTAKKFFDAVPYDELLNVPI 746 L+F + V+ E+ + V+ +L V T K D +P D++++VP+ Sbjct: 536 LEFASILVNVLYEQVSLRSVICNSLTALVETNSKVADKLPLDDVISVPV 584 >SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr 2|||Manual Length = 157 Score = 25.8 bits (54), Expect = 6.7 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%) Frame = -2 Query: 263 YPHRIGKQ-KPSKFPPLNTTH 204 YP + K+ +PS+ PPL +TH Sbjct: 54 YPESVSKRARPSQKPPLRSTH 74 >SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase Arg5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 415 Score = 25.4 bits (53), Expect = 8.9 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -2 Query: 263 YPHRIGKQKPSKFPPLNTTHE*IVDK 186 +P R GK+ SK PP+ T HE I+ K Sbjct: 8 FPLRFGKRFYSKVPPV-TNHERILPK 32 >SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit Rec11|Schizosaccharomyces pombe|chr 3|||Manual Length = 923 Score = 25.4 bits (53), Expect = 8.9 Identities = 9/26 (34%), Positives = 18/26 (69%) Frame = +3 Query: 135 NILFYNLYNIKAIIKVIFVHYLLMCC 212 ++LF +++I+A I+++ V L CC Sbjct: 276 SVLFSRIHDIRASIRIVCVTALYDCC 301 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,980,932 Number of Sequences: 5004 Number of extensions: 61139 Number of successful extensions: 151 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 146 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 151 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 363302114 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -