Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0628
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 33 0.058
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 27 2.2
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 2.2
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 27 3.8
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 27 3.8
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 26 5.1
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 26 6.7
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 26 6.7
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha... 25 8.9
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 25 8.9
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 32.7 bits (71), Expect = 0.058
Identities = 18/74 (24%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +2
Query: 206 VLYLRVETCLVFVYLFYVDIVLFVSQLCK-*KVHDVIIQVVNFICVSLLSFQLSLISNSS 382
+L+L + C++FVY+ D++L + +C + V++ +V+ +C+ +F+ +L +
Sbjct: 169 ILWLII-CCILFVYIKSGDLILNKALICSTCTISAVLLLIVSSVCIPFWTFERTLAKLAK 227
Query: 383 PYLLHAIFFIALVG 424
LL + + L G
Sbjct: 228 VLLLQSGIVLVLNG 241
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 27.5 bits (58), Expect = 2.2
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Frame = +3
Query: 126 IFLNILFYNLYNIKAIIKVIFVHYLLMCCI*GWKLAWFLFTYSMWILCYSYLNYVNKKYT 305
I++N FY LYNIK I +I ++ C+ L FL YS IL + ++ K++
Sbjct: 2 IYIN--FYELYNIKNIRPLIPSFHV---CL----LIMFLILYSQEILSFFFM---CSKFS 49
Query: 306 M**FRL*ILFV*AYSHSNFLSFPTR-RRISYMLFFLLPL*ANEH 434
M + +LF +S T R++ Y + L L A+E+
Sbjct: 50 MNSLKFCVLFSFKTVYSLLKLIKTLIRKLLYCFHYALDLFADEY 93
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -3
Query: 496 SVPGIAEVHGRR*PLTSRWAVCSFAYKGNKKNSM*EIRRRVGNERKLE*E*AYTNKI 326
S P + +H + VC +Y+GN+K + G E+KL+ + A +I
Sbjct: 34 SSPNESVIHSSHSASEADEYVCKLSYEGNRKKRIYNGSAEAGKEKKLQKQRAQEERI 90
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = -1
Query: 435 YVRLPTRAIKKIACKRYGDELEMRESWNESRLTQIKFTT*IITS 304
Y PT I+++ C G+E+ + + +R++ I+ T + T+
Sbjct: 42 YDDAPTEGIRRVLCYASGEEIPRKVPLDLTRVSSIRMGTTVATN 85
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +1
Query: 292 IKSTRCDNSGCKFYLCKPTLIPTFSHFQLVAVSLTCYFFYCP 417
I ++ CDN+ +++L P L+P ++ + + V C + P
Sbjct: 1001 IVNSVCDNAVSQYFLVTPKLLPDLTYHRNLKVLCICNGAWLP 1042
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 26.2 bits (55), Expect = 5.1
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Frame = +3
Query: 600 VLQFLNENWRVVTEEFGQPVVDYA---LNV-----TVNTAKKFFDAVPYDE 728
++ FL EN ++ E+F + VD LN +VNTA +FF A+ Y E
Sbjct: 730 LVSFLLENSALLLEKFEEEDVDSTNCNLNTMEALASVNTALQFFSALNYSE 780
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 603 LQFLNENWRVVTEEFG-QPVVDYALNVTVNTAKKFFDAVPYDELLNVPI 746
L+F + V+ E+ + V+ +L V T K D +P D++++VP+
Sbjct: 536 LEFASILVNVLYEQVSLRSVICNSLTALVETNSKVADKLPLDDVISVPV 584
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -2
Query: 263 YPHRIGKQ-KPSKFPPLNTTH 204
YP + K+ +PS+ PPL +TH
Sbjct: 54 YPESVSKRARPSQKPPLRSTH 74
>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 263 YPHRIGKQKPSKFPPLNTTHE*IVDK 186
+P R GK+ SK PP+ T HE I+ K
Sbjct: 8 FPLRFGKRFYSKVPPV-TNHERILPK 32
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 25.4 bits (53), Expect = 8.9
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +3
Query: 135 NILFYNLYNIKAIIKVIFVHYLLMCC 212
++LF +++I+A I+++ V L CC
Sbjct: 276 SVLFSRIHDIRASIRIVCVTALYDCC 301
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,932
Number of Sequences: 5004
Number of extensions: 61139
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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