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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0628
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    33   0.058
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.2  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    27   2.2  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    27   3.8  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    27   3.8  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   5.1  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    26   6.7  
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    26   6.7  
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    25   8.9  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   8.9  

>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 32.7 bits (71), Expect = 0.058
 Identities = 18/74 (24%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
 Frame = +2

Query: 206 VLYLRVETCLVFVYLFYVDIVLFVSQLCK-*KVHDVIIQVVNFICVSLLSFQLSLISNSS 382
           +L+L +  C++FVY+   D++L  + +C    +  V++ +V+ +C+   +F+ +L   + 
Sbjct: 169 ILWLII-CCILFVYIKSGDLILNKALICSTCTISAVLLLIVSSVCIPFWTFERTLAKLAK 227

Query: 383 PYLLHAIFFIALVG 424
             LL +   + L G
Sbjct: 228 VLLLQSGIVLVLNG 241


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
 Frame = +3

Query: 126 IFLNILFYNLYNIKAIIKVIFVHYLLMCCI*GWKLAWFLFTYSMWILCYSYLNYVNKKYT 305
           I++N  FY LYNIK I  +I   ++   C+    L  FL  YS  IL + ++     K++
Sbjct: 2   IYIN--FYELYNIKNIRPLIPSFHV---CL----LIMFLILYSQEILSFFFM---CSKFS 49

Query: 306 M**FRL*ILFV*AYSHSNFLSFPTR-RRISYMLFFLLPL*ANEH 434
           M   +  +LF     +S      T  R++ Y   + L L A+E+
Sbjct: 50  MNSLKFCVLFSFKTVYSLLKLIKTLIRKLLYCFHYALDLFADEY 93


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -3

Query: 496 SVPGIAEVHGRR*PLTSRWAVCSFAYKGNKKNSM*EIRRRVGNERKLE*E*AYTNKI 326
           S P  + +H       +   VC  +Y+GN+K  +       G E+KL+ + A   +I
Sbjct: 34  SSPNESVIHSSHSASEADEYVCKLSYEGNRKKRIYNGSAEAGKEKKLQKQRAQEERI 90


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -1

Query: 435 YVRLPTRAIKKIACKRYGDELEMRESWNESRLTQIKFTT*IITS 304
           Y   PT  I+++ C   G+E+  +   + +R++ I+  T + T+
Sbjct: 42  YDDAPTEGIRRVLCYASGEEIPRKVPLDLTRVSSIRMGTTVATN 85


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +1

Query: 292  IKSTRCDNSGCKFYLCKPTLIPTFSHFQLVAVSLTCYFFYCP 417
            I ++ CDN+  +++L  P L+P  ++ + + V   C   + P
Sbjct: 1001 IVNSVCDNAVSQYFLVTPKLLPDLTYHRNLKVLCICNGAWLP 1042


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
 Frame = +3

Query: 600 VLQFLNENWRVVTEEFGQPVVDYA---LNV-----TVNTAKKFFDAVPYDE 728
           ++ FL EN  ++ E+F +  VD     LN      +VNTA +FF A+ Y E
Sbjct: 730 LVSFLLENSALLLEKFEEEDVDSTNCNLNTMEALASVNTALQFFSALNYSE 780


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 603 LQFLNENWRVVTEEFG-QPVVDYALNVTVNTAKKFFDAVPYDELLNVPI 746
           L+F +    V+ E+   + V+  +L   V T  K  D +P D++++VP+
Sbjct: 536 LEFASILVNVLYEQVSLRSVICNSLTALVETNSKVADKLPLDDVISVPV 584


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -2

Query: 263 YPHRIGKQ-KPSKFPPLNTTH 204
           YP  + K+ +PS+ PPL +TH
Sbjct: 54  YPESVSKRARPSQKPPLRSTH 74


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 263 YPHRIGKQKPSKFPPLNTTHE*IVDK 186
           +P R GK+  SK PP+ T HE I+ K
Sbjct: 8   FPLRFGKRFYSKVPPV-TNHERILPK 32


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 135 NILFYNLYNIKAIIKVIFVHYLLMCC 212
           ++LF  +++I+A I+++ V  L  CC
Sbjct: 276 SVLFSRIHDIRASIRIVCVTALYDCC 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,932
Number of Sequences: 5004
Number of extensions: 61139
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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