BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0628 (759 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.33 SB_26701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1 SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6) 29 3.1 SB_24394| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1 SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19) 29 5.4 SB_4638| Best HMM Match : DUF1283 (HMM E-Value=0.46) 28 7.2 >SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1107 Score = 32.7 bits (71), Expect = 0.33 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Frame = -2 Query: 752 FWDRHVQ*LVVRNGVEEFLCRIYC---YVQGVIHDRLAEFFRDHPPVFVQELE 603 F + Q V NG++E +CR C + VIH + E + D PP++ E E Sbjct: 371 FGPHNKQFRVSANGLDELICRFVCPSSNEEHVIHCNIYESYPDPPPMWFSESE 423 >SB_26701| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 409 Score = 29.5 bits (63), Expect = 3.1 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = -2 Query: 263 YPHRIGKQKPSKFPPLNTTHE*IVDKNNFNYC 168 YPHRI Q P + PPLN E +F +C Sbjct: 81 YPHRIHLQGPFREPPLNPAMEESNKSMSFVHC 112 >SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6) Length = 550 Score = 29.5 bits (63), Expect = 3.1 Identities = 19/53 (35%), Positives = 28/53 (52%) Frame = +2 Query: 203 HVLYLRVETCLVFVYLFYVDIVLFVSQLCK*KVHDVIIQVVNFICVSLLSFQL 361 HVL + TC VF + YV IV +V+ C + QVV ++ V+ FQ+ Sbjct: 342 HVLRYVMVTCHVFQVVRYVMIVRYVTVTCH------VFQVVRYVTVTCHVFQV 388 >SB_24394| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 287 Score = 29.5 bits (63), Expect = 3.1 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Frame = +2 Query: 380 SPYLLHAIFFIALVGKRTYGPPAGEWLPSPMDFSNARDRAKP-LPTA*YSPKASFEGHVI 556 SP L ++ F+ VG++ +G P G+ D A D A+P LP A P + G I Sbjct: 3 SPLYLFSLLFVVHVGRQVHGAPDGD----VEDTMIAEDEARPVLPDAPRYPPIN-SGDKI 57 Query: 557 ALR 565 AL+ Sbjct: 58 ALK 60 >SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19) Length = 413 Score = 28.7 bits (61), Expect = 5.4 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Frame = +1 Query: 298 STRCDNSGCKFYLCK---PTLIPTFSHFQLVAVSLTCYFFYCPCRQ 426 S C NS C+F C P +I + +V V +T ++C CR+ Sbjct: 70 SLSCCNSVCQFGDCYNPVPAIIGSLVGIGVVVVIVTAIIYFCCCRR 115 >SB_4638| Best HMM Match : DUF1283 (HMM E-Value=0.46) Length = 986 Score = 28.3 bits (60), Expect = 7.2 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = +2 Query: 308 VIIQVVNFICVSLL-SFQLSLISNSSPYLLHAIFFIA 415 VI+ ++NFICV+ + ++Q S+ YL H + +A Sbjct: 895 VILVIINFICVTTIDTYQQPAHSDGKKYLPHLLIRLA 931 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,928,878 Number of Sequences: 59808 Number of extensions: 454995 Number of successful extensions: 1773 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1665 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1772 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2070332524 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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