Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0628
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_26701| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6)                    29   3.1  
SB_24394| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)               29   5.4  
SB_4638| Best HMM Match : DUF1283 (HMM E-Value=0.46)                   28   7.2  

>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1107

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -2

Query: 752 FWDRHVQ*LVVRNGVEEFLCRIYC---YVQGVIHDRLAEFFRDHPPVFVQELE 603
           F   + Q  V  NG++E +CR  C     + VIH  + E + D PP++  E E
Sbjct: 371 FGPHNKQFRVSANGLDELICRFVCPSSNEEHVIHCNIYESYPDPPPMWFSESE 423


>SB_26701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 409

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 263 YPHRIGKQKPSKFPPLNTTHE*IVDKNNFNYC 168
           YPHRI  Q P + PPLN   E      +F +C
Sbjct: 81  YPHRIHLQGPFREPPLNPAMEESNKSMSFVHC 112


>SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6)
          Length = 550

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +2

Query: 203 HVLYLRVETCLVFVYLFYVDIVLFVSQLCK*KVHDVIIQVVNFICVSLLSFQL 361
           HVL   + TC VF  + YV IV +V+  C       + QVV ++ V+   FQ+
Sbjct: 342 HVLRYVMVTCHVFQVVRYVMIVRYVTVTCH------VFQVVRYVTVTCHVFQV 388


>SB_24394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 380 SPYLLHAIFFIALVGKRTYGPPAGEWLPSPMDFSNARDRAKP-LPTA*YSPKASFEGHVI 556
           SP  L ++ F+  VG++ +G P G+      D   A D A+P LP A   P  +  G  I
Sbjct: 3   SPLYLFSLLFVVHVGRQVHGAPDGD----VEDTMIAEDEARPVLPDAPRYPPIN-SGDKI 57

Query: 557 ALR 565
           AL+
Sbjct: 58  ALK 60


>SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)
          Length = 413

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +1

Query: 298 STRCDNSGCKFYLCK---PTLIPTFSHFQLVAVSLTCYFFYCPCRQ 426
           S  C NS C+F  C    P +I +     +V V +T   ++C CR+
Sbjct: 70  SLSCCNSVCQFGDCYNPVPAIIGSLVGIGVVVVIVTAIIYFCCCRR 115


>SB_4638| Best HMM Match : DUF1283 (HMM E-Value=0.46)
          Length = 986

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 308  VIIQVVNFICVSLL-SFQLSLISNSSPYLLHAIFFIA 415
            VI+ ++NFICV+ + ++Q    S+   YL H +  +A
Sbjct: 895  VILVIINFICVTTIDTYQQPAHSDGKKYLPHLLIRLA 931


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,928,878
Number of Sequences: 59808
Number of extensions: 454995
Number of successful extensions: 1773
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1772
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)