Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0628
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031632-4|CAA21007.1|  451|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z92812-1|CAB07276.1|  334|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z83109-3|CAB05515.2|  300|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z92812-4|CAB07278.1|  313|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z75554-11|CAA99961.1|  301|Caenorhabditis elegans Hypothetical p...    28   6.3  

>AL031632-4|CAA21007.1|  451|Caenorhabditis elegans Hypothetical
           protein Y32B12B.5 protein.
          Length = 451

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +1

Query: 334 LCKPTLIPTFSHFQLVAVSLTCYFFY 411
           +C+P ++P    F+LV + + C FF+
Sbjct: 239 VCRPEILPKLDGFKLVIIIIPCMFFF 264


>Z92812-1|CAB07276.1|  334|Caenorhabditis elegans Hypothetical
           protein T03E6.1 protein.
          Length = 334

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 334 LCKPTLIPTFSHFQLVAVSLTCYFFY 411
           +C+P  +P    F+LV + + C FF+
Sbjct: 114 VCRPEFLPKLDGFKLVIIFIPCMFFF 139


>Z83109-3|CAB05515.2|  300|Caenorhabditis elegans Hypothetical
           protein F44G3.5 protein.
          Length = 300

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = +2

Query: 209 LYLRVETCLVFVYLFYVDIVLFVSQLCK*KVHDVIIQVVNFICVSLLSFQLSLISNS 379
           ++L+V   + ++ LF+  +++ V   C  K+     QV+ F C +L  +++ L+ NS
Sbjct: 116 MWLKVYMAVGWIVLFFRQLIIIVPDDCYFKMDLDQFQVITF-CENLEDYEIRLLINS 171


>Z92812-4|CAB07278.1|  313|Caenorhabditis elegans Hypothetical
           protein T03E6.4 protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 334 LCKPTLIPTFSHFQLVAVSLTCYFFY 411
           +C+P L+P     +LV + + C FF+
Sbjct: 114 VCRPELLPKLDGLKLVIIFIPCVFFF 139


>Z75554-11|CAA99961.1|  301|Caenorhabditis elegans Hypothetical
           protein ZC455.8a protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +2

Query: 263 IVLFVSQLCK*KVHDVI--IQVVNFICVSLLSFQLSLISNSSPYLLHAIFFIALVGKRTY 436
           ++LFV  L   K  ++   +   N++C+      L+LI + SP+L+  IF   L+    Y
Sbjct: 191 LILFVKLLSLKKAMNLNNDLSKTNYLCIG--DACLTLIFDFSPFLVTLIFKTQLLSADIY 248

Query: 437 GP 442
           GP
Sbjct: 249 GP 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,457,794
Number of Sequences: 27780
Number of extensions: 353644
Number of successful extensions: 881
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)