Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0625
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    29   0.57 
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr...    26   4.0  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.3  
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr...    25   7.0  

>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 28.7 bits (61), Expect = 0.57
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = +1

Query: 127 RGLCGFYWEEN--CVYSFISGVIFA 195
           RGLC  YW  N   +YSF+  V FA
Sbjct: 256 RGLCHAYWAPNFWALYSFVDRVAFA 280


>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 160 CVYSFISGVIFAKYHQTWNYFTGGRT 237
           C+  F+S  I   YH++W  F   R+
Sbjct: 159 CLTCFLSSFILYAYHESWTKFARERS 184


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 150 PIKSTEPSVSSVPRANISSEMLR 82
           P KS EP  S++P  N  SE +R
Sbjct: 339 PFKSAEPLSSAIPLPNPMSEKMR 361


>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 269

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 164 FIVLYQVLFLPSTIKPGTI 220
           F+VL  ++F+  T+KPG+I
Sbjct: 218 FVVLSILVFIAETVKPGSI 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,109
Number of Sequences: 5004
Number of extensions: 45537
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)