Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0625
         (530 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64030.1 68414.m07252 serpin family protein / serine protease...    28   4.5  
At5g42325.1 68418.m05151 transcription elongation factor-related...    27   6.0  
At4g27050.2 68417.m03890 F-box family protein contains F-box dom...    25   6.8  
At4g27050.1 68417.m03889 F-box family protein contains F-box dom...    25   6.8  
At1g79975.2 68414.m09353 expressed protein                             27   7.9  
At1g79975.1 68414.m09352 expressed protein                             27   7.9  

>At1g64030.1 68414.m07252 serpin family protein / serine protease
           inhibitor family protein similar to phloem serpin-1
           [Cucurbita maxima] GI:9937311, serpin [Triticum
           aestivum] GI:871551; contains Pfam profile PF00079:
           Serpin (serine protease inhibitor)
          Length = 385

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 92  SEEILARGTEDTEGSVDFIG--KKTAFIVLYQVLFLPSTIKPGTILLVVGPLVSPRG 256
           +E   A    D   S+DF+   KK  F+  +  LFL    K GT+L  VG +  P G
Sbjct: 318 AEAAAATADGDCGCSLDFVEPPKKIDFVADHPFLFLIREEKTGTVLF-VGQIFDPSG 373


>At5g42325.1 68418.m05151 transcription elongation factor-related
           contains weak similarity to transcription elongation
           factors
          Length = 233

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 306 DLKGRAAVVTILRPWNLYLKVGGAFTLQMSMGSSNH 413
           D + +  V+T+  PW + + V  A ++  +MG SN+
Sbjct: 137 DTEMKRRVMTVCDPWVVAVSVESAMSILFNMGDSNN 172


>At4g27050.2 68417.m03890 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 453

 Score = 25.0 bits (52), Expect(2) = 6.8
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +3

Query: 255 GRYHRLTYFCREAVMRFDLKGRAAVVTILRPWNLYLKV---GGAF 380
           G  HR+TY C +A     +K R  V  + R     LK+   GG+F
Sbjct: 357 GLVHRVTYCCGDACACIRMKDREIVSCLSRCRVKVLKILGYGGSF 401



 Score = 20.6 bits (41), Expect(2) = 6.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 201 PSNLELFYWW*DL 239
           PS+LE+FY+  DL
Sbjct: 306 PSSLEVFYYCCDL 318


>At4g27050.1 68417.m03889 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 453

 Score = 25.0 bits (52), Expect(2) = 6.8
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +3

Query: 255 GRYHRLTYFCREAVMRFDLKGRAAVVTILRPWNLYLKV---GGAF 380
           G  HR+TY C +A     +K R  V  + R     LK+   GG+F
Sbjct: 357 GLVHRVTYCCGDACACIRMKDREIVSCLSRCRVKVLKILGYGGSF 401



 Score = 20.6 bits (41), Expect(2) = 6.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 201 PSNLELFYWW*DL 239
           PS+LE+FY+  DL
Sbjct: 306 PSSLEVFYYCCDL 318


>At1g79975.2 68414.m09353 expressed protein
          Length = 152

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 479 VVCLFFCYCLNGWTSSQPTW 420
           ++ LFFC    GW SS   W
Sbjct: 98  IIHLFFCIMYGGWPSSMAWW 117


>At1g79975.1 68414.m09352 expressed protein
          Length = 152

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 479 VVCLFFCYCLNGWTSSQPTW 420
           ++ LFFC    GW SS   W
Sbjct: 98  IIHLFFCIMYGGWPSSMAWW 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,688,050
Number of Sequences: 28952
Number of extensions: 242350
Number of successful extensions: 508
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)